Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1202 ATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGCTGGATGAAGTGATAGAGTATCTAAAGCAGTTGCAAGCACAAGTGCAAGTGATGAGTAAAATGAATATGTCAGCCATGATGCTACCAATGGCCATGCAACAACAGCTTCAAATGGCTATGATGACTCCCATGGGCATGGGTATGGGCATGGGTTTGGGAATGGGAATTGACATGAATACCCTTGGCCGTCATGCTAATAACATCAGCATCCCGCCGGTGTTTCATCCTCCGGCGGCATTCATGCCTTTGGCTTTATGGGATGCCTCACTTGGCACTGATCGATCAACAACGGAGATGCCTAACCCATTATCCACATTTTTTGGAGGGCAACCACAGCCTATGACCATGGATGCATACATTAGGATGGTTGCCATGTATCAGCAGCTATACCAACAACCTCCAGCTTCAAATTCCAAGGGCTAA 480 0.4625 MKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQVMSKMNMSAMMLPMAMQQQLQMAMMTPMGMGMGMGLGMGIDMNTLGRHANNISIPPVFHPPAAFMPLALWDASLGTDRSTTEMPNPLSTFFGGQPQPMTMDAYIRMVAMYQQLYQQPPASNSKG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1202 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 53 IPR036638 GO:0046983
Alju11g1202 159 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 157 IPR031066 -
Alju11g1202 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 30 IPR011598 GO:0046983
Alju11g1202 159 Pfam Helix-loop-helix DNA-binding domain 2 31 IPR011598 GO:0046983
Alju11g1202 159 Gene3D - 1 43 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1202 Alju-ChrAlju11 16451297 16457799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1202 1 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.161 5.22e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju11g1202 HLH 5.6e-05 No_clan