Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1190 ATGCGGATTATCTCCGGGTCAAAATGCAAAAGAAATAAAACACTTCATGATTTCCCCATATTTCTGATCCCAGTTCTCTCCTTCATCTTCTTCTTCTCTGAATTTCATAGCTGGTCGGAGAAGATGTTGGATTATGAATGGGGAAATCCGTCTACGATAATGCTCACCGGAAACGACGAAGCTGCAGCCACGGCAGCCGCTGCAGCCGCATCAGATTCCGAACAAACGCACCGGCAAATCTTCGACCACTACAATTCTCACCTGTTCTTACCCGACCACCTTATTTCTCAAGCTCCACCAGGACCCACACCGACCACCACCACCCCCGATTTCTCTCTCGTACACCACCACCAACAATTTTACTCGCAACCCCATCACCACCATATCCACCACCAACAACAACAACATTCTCTCTTCGACACACGCGCCTTCTCCGTCGCGTCCTCGTCGCATTTCCCTTCTCCACCGCCACCACAACCGGCTCAGCCTCCTCATTCCATGTTCTCCCTTGACCCGCTCCCTCCAGTGAACGCCGGCGGTGGGCTTCTGGGGGTGCCCAAGTCCGAGGACGTGGTCCGGCCCATGGACTTCTCGGCGTCTCGAATTGGACTCAACCTCGGTGGCCGAACATACTTCTCCAGCTCCGAGGACGACTTTGTGAACCAGCTCTACCGCCGGCCCAGGCCGTTTGAACCAGGTTCAACGATGTTGTTTAGCAACAACTCGCCGAGATGCCAAGCCGAGGGATGTAATGCCGATCTCTCTCACGCGAAGCACTATCACCGCCGACACAAGGTGTGCGAGTTTCACTCCAAAGCTGCCACCGTGATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTTCATCTTCTTTCGGAGTTTGATAACGGAAAACGAAGCTGCAGGAAAAGATTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAACAACCACCTCATCAAGAAATCCAGAAATCTCACCTCGAAAAGCCTCGCAATTCTACTTTGGACATTGCAGCAAAAGGGTCCTCGCCGGATTCAGGAATCCAGTCATCATCATCGGTGACGGTGGCGGTGTCCCCGCCAGATTATTTCCAGCAAAAGCCATATCATCAAAACACAACAGCATCAAGGACACTGTTTTTCTCAAGTGGGTAG 1170 0.5222 MRIISGSKCKRNKTLHDFPIFLIPVLSFIFFFSEFHSWSEKMLDYEWGNPSTIMLTGNDEAAATAAAAAASDSEQTHRQIFDHYNSHLFLPDHLISQAPPGPTPTTTTPDFSLVHHHQQFYSQPHHHHIHHQQQQHSLFDTRAFSVASSSHFPSPPPPQPAQPPHSMFSLDPLPPVNAGGGLLGVPKSEDVVRPMDFSASRIGLNLGGRTYFSSSEDDFVNQLYRRPRPFEPGSTMLFSNNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPPHQEIQKSHLEKPRNSTLDIAAKGSSPDSGIQSSSSVTVAVSPPDYFQQKPYHQNTTASRTLFFSSG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1190 389 Pfam SBP domain 245 318 IPR004333 GO:0003677
Alju11g1190 389 SUPERFAMILY SBT domain 243 322 IPR036893 GO:0003677|GO:0005634
Alju11g1190 389 Gene3D - 240 306 IPR036893 GO:0003677|GO:0005634
Alju11g1190 389 MobiDBLite consensus disorder prediction 320 338 - -
Alju11g1190 389 FunFam Squamosa promoter-binding-like protein 14 237 306 - -
Alju11g1190 389 MobiDBLite consensus disorder prediction 311 359 - -
Alju11g1190 389 ProSiteProfiles Zinc finger SBP-type profile. 242 319 IPR004333 GO:0003677
Alju11g1190 389 MobiDBLite consensus disorder prediction 341 359 - -
Alju11g1190 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 229 358 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1190 Alju-ChrAlju11 16118522 16121138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1190 42 292 SBP-box Gene Family AT1G02065 46.947 3.11e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju11g1190 SBP 1.2e-30 No_clan