Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1189 ATGGACTTTGAAGGGAACAGTATGTTCGCTAATAGAGAGCAAAACGGTGGTGGAAATAGTAATAACAGTACCCACTTTTCTTGGGATTTATGGGAACCGCCTTCTTCTAACAATTCTACCCTCATCAACACTTTCTACGCCGCCGCCACCGACACGGCGGGGACCTCGGCGGCTGTCGCTGCCACCACTCAGGCCGGCCTGGCCAACGCGCTCATGTTTCTTCCTCAGGCTAGTGGTGGTACTAGTAGCAGTGTGGCTGATCGTGACCACGACGGCGGCGGCGTTGACCACGGTGTACACCATCAGCATCGGCAGCGGTTGCATCAGCGGGAGGTGCTGTACTCTGGAGATGGGGCCCACGTGCATCTGGACCCACATCTCATGTGTTTGAAGCTGGGGAAGAGGCATTATTTTGAGGACGCTAATGCTCCTCTTGGCGGCGGGTTTGCCTTGGCGGGAAAGAGAGGGAGAGGGTTCTGCGGAGGAAGTGCGAAGACGGTGACGGCGGCGACGGTGCCGAGGTGTCAGGTGGAGGGATGCAACGTGGCCCTGTTGAACGCGAAGGAGTATCACAGGAGACACAAAGTTTGTGAGATACATTCCAAGGCAGCGAAGGTTGTGGTGTTGGGGTTGGAACAGAGATTTTGTCAACAGTGTAGCAGGTTTCATGTGGTATCGGAGTTCGATGATTCCAAGAGGAGTTGCCGTAGGAGATTGGCTGGCCACAACGAACGAAGAAGAAAGAGCTTCCATGATTCTGTCACTAGGAATTCCTCATCTCAAGAAAATAAGTTACTAGAGGGAGGGTTTCCATACTTATCATCACCTCCACCACCATCATCTGGCTGTGCTCTCTCTCTTCTGTCATCGTCCAAGAGTGCCGACCATTATTCGTGGCTTTCCCCGGCCGATCTCTCGGCGAGATGTAGTGCCGCCCTACGAGAACTCATAGCCGAGAACCGAGCAACCGCCATGGCTAAACAAATCATTTTGGAAAGAGACTGGCACTACTCACACCACCACCACCACCAAGAAGAAGACGAAGATGATGACCATAATAAGGAGATTCAACTTCATTCTAATTTCAATTTCTCTCAACACCACCACCACATGTTTCCCTAG 1122 0.5232 MDFEGNSMFANREQNGGGNSNNSTHFSWDLWEPPSSNNSTLINTFYAAATDTAGTSAAVAATTQAGLANALMFLPQASGGTSSSVADRDHDGGGVDHGVHHQHRQRLHQREVLYSGDGAHVHLDPHLMCLKLGKRHYFEDANAPLGGGFALAGKRGRGFCGGSAKTVTAATVPRCQVEGCNVALLNAKEYHRRHKVCEIHSKAAKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSFHDSVTRNSSSQENKLLEGGFPYLSSPPPPSSGCALSLLSSSKSADHYSWLSPADLSARCSAALRELIAENRATAMAKQIILERDWHYSHHHHHQEEDEDDDHNKEIQLHSNFNFSQHHHHMFP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1189 373 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Alju11g1189 373 Pfam SBP domain 175 248 IPR004333 GO:0003677
Alju11g1189 373 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
Alju11g1189 373 MobiDBLite consensus disorder prediction 8 30 - -
Alju11g1189 373 MobiDBLite consensus disorder prediction 239 261 - -
Alju11g1189 373 SUPERFAMILY SBT domain 173 254 IPR036893 GO:0003677|GO:0005634
Alju11g1189 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 304 IPR044817 GO:0003677
Alju11g1189 373 MobiDBLite consensus disorder prediction 1 30 - -
Alju11g1189 373 Gene3D - 166 236 IPR036893 GO:0003677|GO:0005634
Alju11g1189 373 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1189 Alju-ChrAlju11 16055647 16057897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1189 128 248 SBP-box Gene Family AT1G27370 52.273 1.24e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju11g1189 SBP 3.9e-31 No_clan