Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1162 ATGACATCCTCCTACGTCTCGATTTCCGAAGACTTAATGGAAGATATGTTTGATATCAGTTTCACTGTCATTCAACATCGGGTTCCCCCCAACACGGGACGCCATCAAATGAGACATTCTGAATTGTTTCCATCTCCATTCACCATGCCTTGTGAAGAATTAATTCAAGATGTTCCAATTTTTCTACGTAGAAATGTAGGCAACTATCTTATAGAAAATGGTGTTGGATCATCAGCATCTCATATCATACCTTACTATCAAGAAGTAATCAACCGTTTCACCATTAGAAGTACTCATCACCGCTTAATACCTCTAATTGTAGACAATGAATACATTGAGTATATGACATATATTATTGGAGATGATGATGAGTCAATAGAAATCTATAGTGCCATGGGCTCATCCGATCAACAATCTTCTGTAAACGATGATATTGAGTCAGTAGAAACCAATCAACTGATAGAGCAATCTATGCAGCACTTCTTCATGGTTCCAGCAACAAAGAAAGCTATGGCATCACTCAAGAAGATGGAAAAGTTTGCTGGTGATGATATAAAGACAAGTACATGTAGCATTTGCTTAGAAGCTTTTAATGATGTGGATGGCGACGATGTTTCATCACTGCCTTGTGACCATTTTTCCCACAATAATTGCATTGTAGGATGGCTAAAAATAGTCCATACATGCCCATTGTGTCACTTTCAGTTGCCTATGTAA 717 0.3794 MTSSYVSISEDLMEDMFDISFTVIQHRVPPNTGRHQMRHSELFPSPFTMPCEELIQDVPIFLRRNVGNYLIENGVGSSASHIIPYYQEVINRFTIRSTHHRLIPLIVDNEYIEYMTYIIGDDDESIEIYSAMGSSDQQSSVNDDIESVETNQLIEQSMQHFFMVPATKKAMASLKKMEKFAGDDIKTSTCSICLEAFNDVDGDDVSSLPCDHFSHNNCIVGWLKIVHTCPLCHFQLPM 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1162 238 PANTHER TARGET OF ERK KINASE MPK-1 101 236 - -
Alju11g1162 238 SUPERFAMILY RING/U-box 175 236 - -
Alju11g1162 238 Pfam Ring finger domain 189 232 IPR001841 -
Alju11g1162 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 238 IPR013083 -
Alju11g1162 238 ProSiteProfiles Zinc finger RING-type profile. 190 233 IPR001841 -
Alju11g1162 238 CDD RING-H2_PA-TM-RING 189 232 - -
Alju11g1162 238 SMART ring_2 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1162 Alju-ChrAlju11 15103331 15104122 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1162 163 237 C3H Transcription Factor Family AT1G18760 40.000 1.50e-12 63.2