Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1156 ATGACATCCTCCTACGTCTCGATTTCCGAAGACTTGATGGAAGATATGTTTGATATCAGTTTTACTGTCATTCAACGTGAGGTTTCACCTAACACGGGGCGCCTTCAAATGACACATTCTGAATTGTTTCCATCCCCATTCACCATGCCTTGTGAAGAATTACTTCGAGATGTTCCAAGTTTTCTACGTAGAAATGTAGGCAACAATCTTACAGAAAATGGTGTTGGCTCATTAGCAACTCATATCATATCTTACTACCAAGAAGTACTCAACCGTTTCAGCATTAGAAGTACTCATCACCGCTTAATACCTCTAATTGTGTATCTTAATGTTGATACATCTGACCATGGCTCAATACCTTTGTTTTTTCATCTTCAAACTACCGCTCTGTATGGAGACAATGAATACATTGAGTATATGACAGATATTATTGGCGATGATGATGAGTCAATAGAAATCTATAGTGCCATGGGCTCATCCGATCAACAATCTTCTGCAAACGATGATATTGAGTCAGCAGAAACTAATCAACTGATAGAGCAATCTATGCAGCACTTCTTCATGGTTCCAGCAACAGAGAAAGCTATGGCATCACTCAAGAAGATGGAAAAGTTTGCTGATGATGATATAAAGACAAGCACATGTAGCATTTGCTTAGAAGCTTTTAATGATGTGGACGGCGACGACGTTTCAGCACTGCCTTGTGACCATTTTTTCCACAATAATTGCATTGTAGGATGGCTAAAAACAGGCCATACATGCCCATTGTGTCGCTTTCAGTTGCCTATGTAA 792 0.3952 MTSSYVSISEDLMEDMFDISFTVIQREVSPNTGRLQMTHSELFPSPFTMPCEELLRDVPSFLRRNVGNNLTENGVGSLATHIISYYQEVLNRFSIRSTHHRLIPLIVYLNVDTSDHGSIPLFFHLQTTALYGDNEYIEYMTDIIGDDDESIEIYSAMGSSDQQSSANDDIESAETNQLIEQSMQHFFMVPATEKAMASLKKMEKFADDDIKTSTCSICLEAFNDVDGDDVSALPCDHFFHNNCIVGWLKTGHTCPLCRFQLPM 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1156 263 CDD RING-H2_PA-TM-RING 214 258 - -
Alju11g1156 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 263 IPR013083 -
Alju11g1156 263 ProSiteProfiles Zinc finger RING-type profile. 215 258 IPR001841 -
Alju11g1156 263 SMART ring_2 215 257 IPR001841 -
Alju11g1156 263 SMART ringv_2 214 258 IPR011016 GO:0008270
Alju11g1156 263 SUPERFAMILY RING/U-box 201 261 - -
Alju11g1156 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 161 262 - -
Alju11g1156 263 Pfam Ring finger domain 214 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1156 Alju-ChrAlju11 15042780 15043571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1156 168 262 C3H Transcription Factor Family AT1G18760 40.000 6.16e-15 70.1