Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1138 ATGACGTCCTCATACGTTTCGATTTCTCAAGATTTGATGGAAGATATGTTCGAAATCAGTTTTACTGTCATTCAACATAGGATTTCGCCAAACACGGGGCATCCCCGAATGACACCTTTTGAAGTGTTTCAATCTCCATTCACTATGCCTTGTGAAGAATTAATTCAAGATGTTCCGGCATTTCTACGTAGAAACGTAGCCAACTATCTTTCTGAAATTGATGTTGGAACATTGGCATCTGAAATCACATCTTACTATCAAGAAGTGATCAATCGTACTGCCACTAGAACTACTTTTCATCGCTTAATACCTCTAATTGTGTATCTTCATGTTGATGCTTTTGATCATGGCTTGGTACCATCGTCGTTTCATCTTCAAACTACCGCTCTATATGGAGACAATGAATACATGATGGATATTTTTGGCGGTGATGATCATGAGTCAACAGCATTCTATCATGCCATAGACCCATCCAGTCAACAATCTTTTCATGATGACAATCAATATCCATTGAATACCAGTGAAGATCTTGAGTTATCAGAAATCAATCAAGTCATAGAGCAATCCATGCAACACTTGCATAGTGTTCCGGCAACAGAGAAGGCTATAGCATCACTAAAGAAGATGAAGAAGTCCAGTGATGAAATAAAGGCAAGCCAATGTAGCATTTGCTTAGAGAATTTTGATGATGAGGAGGACGACGACGACATTTCAGCATTGCCTTGTGACCATTTCTTCCACAGTAATTGCATTGTAGGATGGCTTAACGTAGGCCATACGTGCCCATTATGTCGCTTTGAGTTGTCTGTATAA 813 0.3936 MTSSYVSISQDLMEDMFEISFTVIQHRISPNTGHPRMTPFEVFQSPFTMPCEELIQDVPAFLRRNVANYLSEIDVGTLASEITSYYQEVINRTATRTTFHRLIPLIVYLHVDAFDHGLVPSSFHLQTTALYGDNEYMMDIFGGDDHESTAFYHAIDPSSQQSFHDDNQYPLNTSEDLELSEINQVIEQSMQHLHSVPATEKAIASLKKMKKSSDEIKASQCSICLENFDDEEDDDDISALPCDHFFHSNCIVGWLNVGHTCPLCRFELSV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1138 270 SMART ring_2 221 264 IPR001841 -
Alju11g1138 270 CDD RING-H2_PA-TM-RING 220 265 - -
Alju11g1138 270 Pfam Ring finger domain 220 265 IPR001841 -
Alju11g1138 270 SUPERFAMILY RING/U-box 220 268 - -
Alju11g1138 270 SMART ringv_2 220 265 IPR011016 GO:0008270
Alju11g1138 270 ProSiteProfiles Zinc finger RING-type profile. 221 265 IPR001841 -
Alju11g1138 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 161 268 - -
Alju11g1138 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1138 Alju-ChrAlju11 14730618 14731430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1138 156 270 C3H Transcription Factor Family AT1G68180 34.483 4.47e-14 68.2