Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju11g1099 | ATGTCTCTTATGGTCAGCGATCAAAAATCCAACTTGAAGCACTTCTGCAAAATCTGTAAGAAAGGGTTTGGGTGTGGCAGGGCTCTCGGAGGACACATGAGGGCGCATGGCATCGGAGACGAAAGCAGCGCGATGGACGATGATGACGACGGCGCCAGCGACTGGGAAGACAGCAAGCTCGGCGGAGATGCCAATGATAATATTGCCCCCTCCAATAAACGGATGTACGCTTTGAGGGCGAACCCTAATCGGTTGAAGAGTTGTAGGGCTTGTGAGAATTGTGGTAAAGAGTTCTCATGCTGGAAGTCTTTTCTTGAACATGGTAAATGCAATTCTGACGATGCAGGTGATGAGTCCTTCGTCTCGTCGCCGGGCTCCGACGGTGATGATATGTCAGGTGGGAGAGGTTGTAGTTGGTCTAAGAGGAAAAGGTCTTTCCGAGCCAAAGTGGGAAATAGCTTCAATAATAACAACCCTAATTGCTCATCATCCAATGAGGATGAAGACCTTGCTAACTGTTTAATGATGCTGTCCAACGACGCCCGTGATTCTTCTACGTTGGCGAGCAAAGAGGAAGAGAGAAGAAACCCTAATTTGAGCTCGATGGTTCCAATGTCATCAGATCATAGGAACAAAGCCAAAGAGGTAGGCAATAATAACAACAATAAGGGTTTGTTTGAATGCAAATCATGCAAGAAAGTGTTTAATTCCCATCAGGCATTGGGTGGTCACAGAGCGAGCCACAAGAAAGTCAAAGGTTGCTTCGCCGCCCGGCTCGACAACCTGGACGAGGCCAGCACCGGCGCAGCCGATGATGACGTCGTCACCCAAGAAGATCAACTCAAATCCAACAACAACAACAATTCGACCCTTCACTTGGATCATGGCTCCAACAACAATAACAATGCCTCGTCCTCTAAAAGGAAATCCAAAGTCCATGAATGTTCGATATGTCACCGAGTTTTCTCGTCGGGGCAAGCTCTCGGAGGACACAAGAGGTGTCATTGGATTACGTCAGCCGCACCAGACACCTCAACACTGGCTAGGTTTCAACAATTTCAAGACCAAATAGAACAACACATGAAGAATAATAATACAGTTATACCTAATGATAATAAGTTTGCAGACTCCCACGACGACCCTATTCATCTGAAGCTCGATCTCAACCTCCCGGCTCCGTCGACGGCACGCAATGTCTCCGGAGAAATGTACTTACAGTCATGGGTAGGTGGTGGTGGTAAAGTAGCAAAGCAACATGAAGATGACAAAAGTGATCAAAGCCATAAAAATCATTATCGTCGTCACGATGAACTGGACAATGAGAATACTAATGATGAAGAAGGAAAGAACAGTAACAGAAACCTTAACATTAGCAAAGATTCGACAATGCAAAAAGTGGTGGAAGACGAAGAAGCTAATAACAGTAAGGTGAAGTTAGCGAAACTAAGTGAAGACGATGTAGGAGGGAGTTCTTTGCCATGGTTACAGGTGGGAATCGGTTCCACTACTACTACTGACGTCGGAACTGGCCCATAA | 1536 | 0.4629 | MSLMVSDQKSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESSAMDDDDDGASDWEDSKLGGDANDNIAPSNKRMYALRANPNRLKSCRACENCGKEFSCWKSFLEHGKCNSDDAGDESFVSSPGSDGDDMSGGRGCSWSKRKRSFRAKVGNSFNNNNPNCSSSNEDEDLANCLMMLSNDARDSSTLASKEEERRNPNLSSMVPMSSDHRNKAKEVGNNNNNKGLFECKSCKKVFNSHQALGGHRASHKKVKGCFAARLDNLDEASTGAADDDVVTQEDQLKSNNNNNSTLHLDHGSNNNNNASSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSAAPDTSTLARFQQFQDQIEQHMKNNNTVIPNDNKFADSHDDPIHLKLDLNLPAPSTARNVSGEMYLQSWVGGGGKVAKQHEDDKSDQSHKNHYRRHDELDNENTNDEEGKNSNRNLNISKDSTMQKVVEDEEANNSKVKLAKLSEDDVGGSSLPWLQVGIGSTTTTDVGTGP | 511 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 184 | 219 | - | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 413 | 511 | - | - | |
| Alju11g1099 | 511 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 335 | IPR036236 | - | |
| Alju11g1099 | 511 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 253 | IPR013087 | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 39 | 68 | - | - | |
| Alju11g1099 | 511 | Gene3D | Classic Zinc Finger | 223 | 335 | - | - | |
| Alju11g1099 | 511 | SUPERFAMILY | beta-beta-alpha zinc fingers | 14 | 108 | IPR036236 | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 415 | 448 | - | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 495 | 511 | - | - | |
| Alju11g1099 | 511 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 315 | 335 | IPR013087 | - | |
| Alju11g1099 | 511 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 313 | 335 | IPR013087 | - | |
| Alju11g1099 | 511 | PANTHER | OS02G0659100 PROTEIN | 6 | 504 | - | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 463 | 483 | - | - | |
| Alju11g1099 | 511 | Pfam | C2H2-type zinc finger | 226 | 250 | - | - | |
| Alju11g1099 | 511 | Pfam | C2H2-type zinc finger | 312 | 337 | - | - | |
| Alju11g1099 | 511 | Pfam | C2H2-type zinc finger | 14 | 36 | - | - | |
| Alju11g1099 | 511 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 16 | 36 | IPR013087 | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 281 | 308 | - | - | |
| Alju11g1099 | 511 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 248 | IPR013087 | - | |
| Alju11g1099 | 511 | SMART | c2h2final6 | 226 | 248 | IPR013087 | - | |
| Alju11g1099 | 511 | SMART | c2h2final6 | 313 | 335 | IPR013087 | - | |
| Alju11g1099 | 511 | SMART | c2h2final6 | 14 | 36 | IPR013087 | - | |
| Alju11g1099 | 511 | MobiDBLite | consensus disorder prediction | 281 | 306 | - | - | |
| Alju11g1099 | 511 | Gene3D | Classic Zinc Finger | 11 | 111 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju11g1099 | Alju-ChrAlju11 | 13732576 | 13734111 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju11g1099 | 107 | 340 | C2H2 Transcription Factor Family | AT1G02040 | 40.598 | 3.07e-34 | 129 |