Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1096 ATGGAGAAGCGCGAGTGCAAGCTCTGCTTCAAAACCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGAAGAAGCTTCCGCTACCTTCCAAACCAGAGGAATCTCGATCACCTTCTCCGACCTTACTGAGTTTCGAGGCCGACTCGCCGTCTTCATCTTCGTCATCAGAAGATGAAGGAGACACTGGTCTGAGCTATGTCTTAAGAGATAATCCGAAGAGGAGCATTCGCATCGTAAATCCTGAGTTTTCCTTTGTTGTGGATCCTAATGGCTCTGTGATTCAAGATAGAGAGAGCGAGACGGAGACTGAGTCATCCAAGAAGCCAACTCGGAAACGATCCAAACACCCTTGTAAACTCGGTAGTTTCGATGATGACGATGACGACTACTGTCACAAGAAAATTCAGCAACAAGAAACGGTGGAAAAGATCAAATCGAACGAACTGTGCAAGACCGAGCCGTGGATTGCGGAGGCTGAACCGGCGAGTTCGATCTCCGATACGACCACCGAAGAAGACGTCGCGTACTGCCTTATGATGCTTTCTAGAGACAAATGGAGGAGACAAAACGATCTGAAAGACCAATACGACGTCGTGGAGGCAGACGAGGACAAGGATGAGGAAGAAGATGAAGATGAAGAAGACGATGGCGATGGCGATGAATCCGAGGGGGCTTTCAAGTCGTTGAAATCCAGAAATAGCGGTAAGTACACGTGTGAGACGTGCAAAAAGGTGTTTCGATCTTATCAAGCACTTGGTGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGGAGGTCGAGAAACATAATAATGGAGTCACTTCATCTTCTTCTTCAACGTTCCATCAGAAAATTCATGAATGCCCAGTCTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGGGGACACAAGAGGACCCATCTTACTGGTTCGTCCACATTACTACCCACTCGATCTTCCACTAAACTGGTTGGAAATTTCATAGATCTTAACCTTCCTGCTCCGGCGACGGACGAAGACGATATCAGCCAAATCGACAATTCTGGAGTTTCAGATGCAGAATTCCTCGTTGATCGCATCAGACAGTGA 1104 0.4746 MEKRECKLCFKTFANGRALGGHMRSHMKKLPLPSKPEESRSPSPTLLSFEADSPSSSSSSEDEGDTGLSYVLRDNPKRSIRIVNPEFSFVVDPNGSVIQDRESETETESSKKPTRKRSKHPCKLGSFDDDDDDYCHKKIQQQETVEKIKSNELCKTEPWIAEAEPASSISDTTTEEDVAYCLMMLSRDKWRRQNDLKDQYDVVEADEDKDEEEDEDEEDDGDGDESEGAFKSLKSRNSGKYTCETCKKVFRSYQALGGHRASHKKIKVEVEKHNNGVTSSSSSTFHQKIHECPVCFRVFASGQALGGHKRTHLTGSSTLLPTRSSTKLVGNFIDLNLPAPATDEDDISQIDNSGVSDAEFLVDRIRQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1096 367 Gene3D Classic Zinc Finger 238 312 - -
Alju11g1096 367 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Alju11g1096 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Alju11g1096 367 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 362 IPR044303 GO:0006355
Alju11g1096 367 MobiDBLite consensus disorder prediction 21 72 - -
Alju11g1096 367 SUPERFAMILY beta-beta-alpha zinc fingers 5 263 IPR036236 -
Alju11g1096 367 SUPERFAMILY beta-beta-alpha zinc fingers 286 314 IPR036236 -
Alju11g1096 367 MobiDBLite consensus disorder prediction 93 126 - -
Alju11g1096 367 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Alju11g1096 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 312 IPR013087 -
Alju11g1096 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Alju11g1096 367 SMART c2h2final6 290 312 IPR013087 -
Alju11g1096 367 SMART c2h2final6 4 26 IPR013087 -
Alju11g1096 367 SMART c2h2final6 241 263 IPR013087 -
Alju11g1096 367 MobiDBLite consensus disorder prediction 39 65 - -
Alju11g1096 367 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Alju11g1096 367 MobiDBLite consensus disorder prediction 204 225 - -
Alju11g1096 367 MobiDBLite consensus disorder prediction 99 113 - -
Alju11g1096 367 Pfam C2H2-type zinc finger 5 29 - -
Alju11g1096 367 Pfam C2H2-type zinc finger 241 265 - -
Alju11g1096 367 Pfam C2H2-type zinc finger 290 313 - -
Alju11g1096 367 MobiDBLite consensus disorder prediction 198 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1096 Alju-ChrAlju11 13685149 13686252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1096 1 350 C2H2 Transcription Factor Family AT3G60580 39.167 1.67e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju11g1096 zf-C2H2_6 5.8e-10 CL0361