Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1041 ATGGGAGGCGTGCCTGCACCCTCAATTTCCAATGAACGAGTCGCTTCCAAGCTAAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTTCCAAGGCCGTTAGGGCCGAAGAGTGGGGCTTGATCGATCATGCTATTCTTCATTATAACAACGCACAGCGGATTTTGATCGAAGCCAGTTCTACAGCTGTGCCTTCCTTTATTACTTCCAGTGAACTAGAGAAGGTGAAATCTTATCGTGAAAAAATATCGAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGTAGACGGTCAGGCGTCAAGTCCACTATTCAGGTACGATGTGAACTAGCTAAGTTCACTTTCTTTTGCAACTATGGAATGCTCTTGCTGATATTGGGATTTAAGAAAACTGCAACTCAGGGACAAACTGCTGCTGTTCCATTTAAGGCATCAAATGCTAGAAAAAGTGTGTTGCAAAAGAATCACCAAAGAACAAACCAAATGGATAAAGATGCAAGCCCAAGATCTAGTCAGATATCAGGCGGAGATTATGATGCAAAATCAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATATTGAGGGTCTTGAGAAGGCAAAGCAGGCGATATTGGGATTTAAGAAAACTGCAACTCAGGGACAAACTGCTGCTGTTCCATTTAAGGCATCAAATGCTAGAAAAAGTGTTTTGCAAAAGAATCATCAAAGAACAAACCAAATGGATAAAGATGCAAGCCCAAGATCTAGTCAGATATCAGGTGGAGATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCAAAGCAGGCATTAATGGAAATGGTTATTTTGCCGACTAAGAGAAGAGATCTCTTCACTGGTCTTCGAAGGCCGGCTAGAGGTTTGCTTCTCTTTGGTCCCCCGGGTAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTCAATGTATCCGCAGCTTCCTTGACATCAAAATGGGTTGGTGAAGCTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAGCCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTCGATGGGGTGACGTCCAATCCTGATGACATTGTAATTGTTATTGGAGCAACCAATAAGCCACAAGAATTGGATGATGCAGTCCTTCGGAGACTTGTGAAGAGAATTTACGTACCTTTGCCAGATGCTAATGTTCGGAGACTTCTACTAAAGCACAAACTCAAGGGTCATGCGTTCTCATTACCTAGTGGAGATCTAGAAAAGCTTGTAAAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGTTGGGTTCTGATATCCTAACTGTTAAGCCAAATCAGGTAAGAGGACTGAGATATGGGGATTTTAAGAAGGCAATGAGTGTAATTAGACCAAGTTTAAACAAAAGCAAGTGGGAAGATCTTGAGCGGTGGAATGAGGAATTTGGCTCCAACTGA 1683 0.4165 MGGVPAPSISNERVASKLKGYFDLAKEEISKAVRAEEWGLIDHAILHYNNAQRILIEASSTAVPSFITSSELEKVKSYREKISKWQGQVSERLQILSRRSGVKSTIQVRCELAKFTFFCNYGMLLLILGFKKTATQGQTAAVPFKASNARKSVLQKNHQRTNQMDKDASPRSSQISGGDYDAKSVETINTAIVDRSPSVRWEDIEGLEKAKQAILGFKKTATQGQTAAVPFKASNARKSVLQKNHQRTNQMDKDASPRSSQISGGDYDAKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEAEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDANVRRLLLKHKLKGHAFSLPSGDLEKLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKPNQVRGLRYGDFKKAMSVIRPSLNKSKWEDLERWNEEFGSN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1041 560 Gene3D - 456 538 - -
Alju11g1041 560 MobiDBLite consensus disorder prediction 166 180 - -
Alju11g1041 560 Pfam ATPase family associated with various cellular activities (AAA) 325 455 IPR003959 GO:0005524|GO:0016887
Alju11g1041 560 FunFam AAA-type ATPase family protein 456 538 - -
Alju11g1041 560 Pfam AAA+ lid domain 480 511 IPR041569 -
Alju11g1041 560 SMART smart 18 95 IPR007330 -
Alju11g1041 560 MobiDBLite consensus disorder prediction 151 180 - -
Alju11g1041 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 557 IPR027417 -
Alju11g1041 560 PANTHER AAA DOMAIN-CONTAINING 243 559 - -
Alju11g1041 560 CDD MIT_spastin 18 96 - -
Alju11g1041 560 Gene3D - 284 554 IPR027417 -
Alju11g1041 560 ProSitePatterns AAA-protein family signature. 427 446 IPR003960 GO:0005524|GO:0016887
Alju11g1041 560 Gene3D - 10 99 - -
Alju11g1041 560 FunFam AAA-type ATPase family protein 11 100 - -
Alju11g1041 560 FunFam Spastin, putative 284 468 - -
Alju11g1041 560 MobiDBLite consensus disorder prediction 237 264 - -
Alju11g1041 560 SMART AAA_5 321 457 IPR003593 GO:0016887
Alju11g1041 560 CDD RecA-like_spastin 290 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1041 Alju-ChrAlju11 12739558 12757106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1041 284 510 Calmodulin-binding Proteins AT3G56690 42.373 1.04e-45 171