Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g1008 ATGCAATTAGCATCAAATGGTAACAAGGAAGAATGTTCAGAGAGTGAACCCATCTTGAATCAGCATCGCGATTTGGAAGAATCTGGAGAACCTCCATTTTCATGTGAAATTACAGATGCTGGAGGGGATTTGACTGCTGATGATTTGCAGAATATTCAAGTTGATGAAGCATGTCGTCTGGTAAATGGAGATCAGCCACAATGCCGGATATGCCTTGATAGTGGAGGAGAAGATATAATTGCTCCATGCCATTGCAAAGGTACTCAAAAGTATGTCCACAGATCATGTCTTGATAATTGGAGGTCTACTAAGGAAGGCTTTGCTTTTTCACACTGTACAGAATGCAGAGCTGTCTTCATATTGCGTGCTAATGTCCCTAATGATCGGTGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCAAGGGATCATGCGTTTATTTTTATAACTGTTCAGCTGGTTGTTGCATTCCTGGGAATTCTTGTCTACAAATTTTATGGAGATGAATTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTCTATACTATGGCTGTTTTAGCCATCGTTTTGGTGGGTTTACTCTATGGCTTCTTCATAGCCATTATATGTGGCCAAAGAATCAGTGAACGCCATTACCATGTTCTTGCCAAACAGGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATATAAAGAATATACCTGAACTTGATCCAAGTCATGTGACAGAACTGAGAATGTTAGGTCTTTACTAA 768 0.3932 MQLASNGNKEECSESEPILNQHRDLEESGEPPFSCEITDAGGDLTADDLQNIQVDEACRLVNGDQPQCRICLDSGGEDIIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPNDRWWLRLKFQFLVARDHAFIFITVQLVVAFLGILVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRISERHYHVLAKQELTKEYVVEDREHIKNIPELDPSHVTELRMLGLY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g1008 255 CDD RING_CH-C4HC3_MARCH 68 116 - -
Alju11g1008 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 120 IPR013083 -
Alju11g1008 255 SMART ringv_2 67 116 IPR011016 GO:0008270
Alju11g1008 255 ProSiteProfiles Zinc finger RING-CH-type profile. 60 122 IPR011016 GO:0008270
Alju11g1008 255 Pfam RING-variant domain 68 115 IPR011016 GO:0008270
Alju11g1008 255 SUPERFAMILY RING/U-box 64 119 - -
Alju11g1008 255 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 188 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g1008 Alju-ChrAlju11 12186283 12189564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g1008 55 214 C3H Transcription Factor Family AT1G50440 74.375 2.96e-87 257