Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0996 ATGGATGGTATTCATGGGAATGATTCTGGGATACACATGAGTGATGCACAACATCCAATGCATGTGCCATATGTGCCCGAAAATGAACAACATGGATTGGACCATATGAGTGATGGCAATAGGATGGAAGACAATAACAATTGTGGTGATACTAATGTCAGCGGACATGAGAGCATAGAAGAAGTTGCCAACCCTGGAAATGTTACTGACGATCATGGTGCAATAATTGAACAAGCTAGTGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCAGAAAAGGTTCAAGCTGTGCTTTTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATACAATGAATGTTCACCATAATAATCGGGATATGTCTGGGGCTCCAGCAAAACTCAGTGTCCCTCAAAGACTAGCCTCATTGATTAGATTTCGAGAAAAGCGGAAAGAACGGAATTTTGAAAAGAAAATACGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCAAACCCTGATGAATCTGTGCCAGCTGCAACAAATTTTGGGACAAATGAAAACTGGACATCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTACCTGGACACAGTTCTCCATTAAATAGGAATGAGAATAAAAGTTTAGGCCAGGCAGGTAGTTCTTAG 861 0.4286 MDGIHGNDSGIHMSDAQHPMHVPYVPENEQHGLDHMSDGNRMEDNNNCGDTNVSGHESIEEVANPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANTMNVHHNNRDMSGAPAKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESVPAATNFGTNENWTSDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHSSPLNRNENKSLGQAGSS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0996 286 SMART GATA_3 214 267 IPR000679 GO:0006355|GO:0043565
Alju11g0996 286 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Alju11g0996 286 Pfam tify domain 80 111 IPR010399 -
Alju11g0996 286 PANTHER GATA TRANSCRIPTION FACTOR 28 26 277 IPR045280 GO:0006355
Alju11g0996 286 Gene3D - 211 275 IPR013088 GO:0006355|GO:0008270
Alju11g0996 286 CDD ZnF_GATA 219 262 IPR000679 GO:0006355|GO:0043565
Alju11g0996 286 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Alju11g0996 286 Pfam GATA zinc finger 220 256 IPR000679 GO:0006355|GO:0043565
Alju11g0996 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 266 - -
Alju11g0996 286 MobiDBLite consensus disorder prediction 260 286 - -
Alju11g0996 286 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Alju11g0996 286 SMART tify_2 77 112 IPR010399 -
Alju11g0996 286 MobiDBLite consensus disorder prediction 266 286 - -
Alju11g0996 286 Pfam CCT motif 144 186 IPR010402 GO:0005515
Alju11g0996 286 ProSiteProfiles GATA-type zinc finger domain profile. 214 262 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0996 Alju-ChrAlju11 12049283 12052867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0996 1 280 Tify Gene Family AT1G51600 58.131 1.63e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju11g0996 CCT 1.3e-14 CL0281