Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0984 ATGCGGCTTTTTCTTGAGAAATATTCCAAGAAGAAGAATAGAGCTCTCATGGCAAGATTCGAGTGTGACTTGTGCTCTAAGACGTTCGAGAGTGAAAGGGAGAGGGAAATGCACATGAAAGCTCACGAGAAGCCTTCCTTAAGCATCGAAATAGATTCATATGACAAAAAGTCTTTCAAGAGGCCACTCACAGAAGAAGAGTTGGAACCTATAAGAACTCTGGTTACCCTTGCAGTGAACGAAGACAATGGCGTTGGTCAATGCAAGAAAAGAAAGTTGGATTACAAGTGCCTTGTCTATTCGAAGGAGTTTCCTTCAAGTCCAGCCCTCGGCGGACAAATGAGGAAACATCGTCCTCGTGCGCTGTCACACCCCACTGAGCTAACTTTTTGGGAAGAAAGTAATGGGCTCGTGACAAGTGTTATCAGAGCCGGACCCAGGTTTGCCCAGTCAGTGGGCCACTCCGTGATGATGGTACCACGTATTGGTCGGGGGAGCTGTCATGCCCCATATCGGAAGGACCTAAGGGTGGTCTTGGCTATATTAGTGGGTGCGCTGCACACCCCACTGAGCTAG 576 0.4826 MRLFLEKYSKKKNRALMARFECDLCSKTFESEREREMHMKAHEKPSLSIEIDSYDKKSFKRPLTEEELEPIRTLVTLAVNEDNGVGQCKKRKLDYKCLVYSKEFPSSPALGGQMRKHRPRALSHPTELTFWEESNGLVTSVIRAGPRFAQSVGHSVMMVPRIGRGSCHAPYRKDLRVVLAILVGALHTPLS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0984 191 Gene3D Classic Zinc Finger 17 117 - -
Alju11g0984 191 Pfam C2H2-type zinc finger 19 45 - -
Alju11g0984 191 SUPERFAMILY beta-beta-alpha zinc fingers 20 117 IPR036236 -
Alju11g0984 191 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Alju11g0984 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Alju11g0984 191 SMART c2h2final6 20 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0984 Alju-ChrAlju11 11886722 11887927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0984 20 118 C2H2 Transcription Factor Family AT5G03510 30.693 2.10e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju11g0984 zf-C2H2_6 1.2e-05 CL0361