LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g0959	ATGTCCAAAATAGCCATCAGGAGTTCAGTACTGCTGGTGAGTGACCCCAACTCTCCCCACGCTTTCCTTTCCCATCATAAATTGGCCTCCCTCCTCGTTTATTTCATTCTCCCCTCCTTCCACCACCAAAATCACAACCAATCTCTCTCTCTCTCTCTCTCTTCATCTTTCTCACCTTCCGTGGGACCCACTGTCAGCGAGATGATCATCAACGTGAAGGCGTCCACCATGGTGCGGCCGGCGGAGGAGACGCCGCGCCGGGCGCTGTGGAACTCCAACGTCGACCTCGTCGTGCCTAACTTCCACACGCCCAGCGTCTACTTTTACCGGCCCATCGGTGCCGCCGACTTCTTTGACGCTGATGTAATGAAGAAAGCTCTTGCCAAGGCTCTGGTTCCGTTCTATCCGATGGCCGGCCGGCTCCGCCGTGATGAGGATGGTCGTGTTGAGATTGATTGCAATGGAGAGGGTGTGCTCTTCGTCGAGGCTGAGACCACCGGCGTGATCGATGATTTCGGTGACTTCGCTCCCACGCTCGAGCTCCGGCAGCTTATTCCCGCCGTCGATTATTCTGGCGGAATCGAAACGTATCCACTGTTAGTTTTGCAGGTAACGTACTTTAAATGTGGGGGTGTGTCCCTTGGTGTAGGGATGCAACACCATGCAGCAGATGGCTTCTCTGGTCTCCACTTCATCAACACATGGTCAGACATGGCTCGTGGCTTAGACCTCACCCTCCCACCCTTCATTGATCGCACTTTGCTCCGAGCCCGTGACCCGCCTCGGCCGGTTTTCGAGCACATTGAATACAAGCTCCCTCCAACCATGAAGTCCCCGGTTCAGACCGCCTCCAAACCCGGTTCAGACAACAACCCAGCAGCCGCAGCCGTCTCCATCTTCAAGATGACTCGTGACCAACTCAACGCCCTCAAAGCCAAGTCCAAAGAAGCTGGCAACACCGTTACCTATAGCTCCTATGAGATGCTTGCTGGCCACGTCTGGAGAAGCACGTGCAAGGCACGTGCACTCCCAGATGACCAGGAGACCAAGTTGTACATAGCAACAGATGGACGGTCCAGATTGCAGCCACCCCTTCCACCAGGTTACTTTGGGAATGTGATCTTCACAGCCACACCTATGGCTATGGCTGGTGATCTCATGTCAAAACCAACTTGGTTTGCTGCGAGCAGGATCCATAATGCGCTCTCAAGAATGGATAATGAGTATTTGAGATCAGCTTTGGACTATCTCGAGCTTCAACCTGATCTCAAAGCTCTTGTTCGTGGGGCCCACACTTTTAGGTGTCCAAACCTTGGGATCACAAGTTGGGTTAGGCTTCCCATACATGATGCTGATTTTGGATGGGGAAGACCTATTTTTATGGGACCTGGTGGGATAGCTTATGAGGGGCTTTCTTTTATACTTCCAAACTCAAATAATGATGGAACCTTATCAGTGGCCATAGCTTTACAGCCTGAGCATATGAAGGTTTTCAAGGAAGCCTTGTACGATATTTGA	1518	0.5224	MSKIAIRSSVLLVSDPNSPHAFLSHHKLASLLVYFILPSFHHQNHNQSLSLSLSSSFSPSVGPTVSEMIINVKASTMVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPIGAADFFDADVMKKALAKALVPFYPMAGRLRRDEDGRVEIDCNGEGVLFVEAETTGVIDDFGDFAPTLELRQLIPAVDYSGGIETYPLLVLQVTYFKCGGVSLGVGMQHHAADGFSGLHFINTWSDMARGLDLTLPPFIDRTLLRARDPPRPVFEHIEYKLPPTMKSPVQTASKPGSDNNPAAAAVSIFKMTRDQLNALKAKSKEAGNTVTYSSYEMLAGHVWRSTCKARALPDDQETKLYIATDGRSRLQPPLPPGYFGNVIFTATPMAMAGDLMSKPTWFAASRIHNALSRMDNEYLRSALDYLELQPDLKALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPNSNNDGTLSVAIALQPEHMKVFKEALYDI	505

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g0959	505	FunFam	Spermidine hydroxycinnamoyl transferase	68	270	-	-
	Alju11g0959	505	Pfam	Transferase family	70	503	-	-
	Alju11g0959	505	Gene3D	-	64	272	IPR023213	-
	Alju11g0959	505	Gene3D	-	285	505	IPR023213	-
	Alju11g0959	505	FunFam	Tryptamine hydroxycinnamoyl transferase	281	503	-	-
	Alju11g0959	505	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	75	503	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g0959	Alju-ChrAlju11	11579237	11584568	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g0959	68	505	Monolignol Biosynthesis Gene Families	AT5G48930	78.082	0.0	720

Showing 1 to 1 of 1 entries