Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0907 ATGGATACAAGTGATTGGAGAACTCAACTGCAACCTAATTCACGCGAAAGAATTATCAACAAAATAATGGATGCATTAAAGAGACATCTTTGCATTTCTGGTCAAGATGGATTGCATGAATTGCGCAAAATTGCTCAAAGGTTTGAAGATAAGATTTATACTGCTACAACAAGCCAGTCTGATTATCTTCGGAAAATATCTTTGAAGATACTTACAATGGATAATAAAACCCAGAATACCATGGTCAACCCTACGCAATCAAATGCAGGTGGCCCTAGCTACAAGCCTATTGATTCAGGAATTCCTATGCAGTCTCAAGTTCACAATCCAGGGCAGTCACATGCTATTCCAGTGCCTAATCAGAATCAGCAAGCCAGTAATGTTCAACAGCCAACGCAACCTATACTGCAGCAAGAGGCCCAATCTGTTATCAGGCAACAACAACAACAAAATACATCGATTAATAACCAGCAACAAATCCCAATTTCTCAACAGCCAATATTGGCTCCACAGCAGCAGCAGCACCTTCTAGCGCTACAGTCAAATGTAACAAGCATGCAACACCCTCAGCTACTTGGGCAACAGAATGATGTTGATATGCAGAAACATCTGAGATCGCTTGTTGGGCAGCAGAATAATCTTCCAATCCTGCAGCTGCACCAGCAGCAGTTGATAAATCAGCAAAACAATCTCGCCAACATGCATCAGCAACAGTTGGGAAGTAAGATCCCAGGTTTACAACTACAACAGAAGCTTGCAACTCAGTCTGGCAACTCAGGCTTGCAGACTAACCCCTTGCAACGAGATATGCAGCAAAGACTTCAGGCTTCGAGTTCTTTGCTTCAACAGCAAAATGTACTACTTGATCAACAAAAGCAATTATGTCAGTCACAAAGAGCTCTTCCAAACTCATCATCAACTTCTCTAGATTCAACAACACAGACCAGAAGACCTGAAGAGGATGATTGGAAAGAAGAGGTGTACGAAAAGATCAAGTCCATGAAAGAATCATACTTGCCAGAATTGTCTGAAATGCACCAGAAAATTGAAGCTAAACTTCAGCAGCTTGAAGCCCTTCCAGATGGACCCAGGTCAGATCAACTTTCAAAGCTGAAGATATTCAAAACATTGTTGGAGCGTCTCATGGCATTTCTACAGGTTTCTAAGAGCAGTGTTCTGCCTAGTTTCAAGGAAAAATTTGTTTCATATGAGAAGCAGATCTTAACCTTTATAGAAACAAATAGGCCGAGGAAAGCTATGTCTTCTATGCAGAGAGGACAACTTCCTCCACCTCATATGCACCCAGTACCAGAGTCACAATCCCAACTTACTCAAGTGCAATCTCATGAAAATCAAATGAACTCTCAGATGCAATCAACAAACTTTCAGAGTTTTGTGAATTTCCTGCAGCAGGCTGGAGCGAGCTCCCTTCAACAAAACTCTCTGAATGCTCCTCAACAGCAAAATGTACTTGATCAACAAAAGCAATCATATCAGTCGCAAAGAACTCTTCCTGTTTCATCATCATCTTCTCTAGGTTCAACTGCACTGACTGGAAAATCTGGTGGGGATGATTGGCTAGAAGAGGCTTACCAAAAGAAAAAGAATGTGAGGAAGTCTCCTGAACCCCCTAAAGAGCCAGTTTTCAACTGCCCAATATGTATGGATCCTTTGGTAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCTGCAATAAATGCACAGGGTAAATGCCCTACCTGTAGGAAAAAGGCTAATGTGAAAGAGCTCATAAGGGTTTTTCTCCCATCAGCTAGTTGA 1821 0.4157 MDTSDWRTQLQPNSRERIINKIMDALKRHLCISGQDGLHELRKIAQRFEDKIYTATTSQSDYLRKISLKILTMDNKTQNTMVNPTQSNAGGPSYKPIDSGIPMQSQVHNPGQSHAIPVPNQNQQASNVQQPTQPILQQEAQSVIRQQQQQNTSINNQQQIPISQQPILAPQQQQHLLALQSNVTSMQHPQLLGQQNDVDMQKHLRSLVGQQNNLPILQLHQQQLINQQNNLANMHQQQLGSKIPGLQLQQKLATQSGNSGLQTNPLQRDMQQRLQASSSLLQQQNVLLDQQKQLCQSQRALPNSSSTSLDSTTQTRRPEEDDWKEEVYEKIKSMKESYLPELSEMHQKIEAKLQQLEALPDGPRSDQLSKLKIFKTLLERLMAFLQVSKSSVLPSFKEKFVSYEKQILTFIETNRPRKAMSSMQRGQLPPPHMHPVPESQSQLTQVQSHENQMNSQMQSTNFQSFVNFLQQAGASSLQQNSLNAPQQQNVLDQQKQSYQSQRTLPVSSSSSLGSTALTGKSGGDDWLEEAYQKKKNVRKSPEPPKEPVFNCPICMDPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKKANVKELIRVFLPSAS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0907 606 MobiDBLite consensus disorder prediction 477 524 - -
Alju11g0907 606 FunFam Mediator of RNA polymerase II transcription subunit 15a 5 83 - -
Alju11g0907 606 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 423 534 IPR044661 GO:0003713|GO:0031490
Alju11g0907 606 SUPERFAMILY RING/U-box 550 594 - -
Alju11g0907 606 MobiDBLite consensus disorder prediction 437 457 - -
Alju11g0907 606 Pfam Zinc finger, C3HC4 type (RING finger) 550 588 - -
Alju11g0907 606 ProSiteProfiles Zinc finger RING-type profile. 551 589 IPR001841 -
Alju11g0907 606 MobiDBLite consensus disorder prediction 297 324 - -
Alju11g0907 606 Coils Coil 339 359 - -
Alju11g0907 606 MobiDBLite consensus disorder prediction 418 457 - -
Alju11g0907 606 Gene3D Coactivator CBP, KIX domain 5 83 IPR036529 GO:0003712|GO:0006355
Alju11g0907 606 Pfam KIX domain 4 82 IPR036546 -
Alju11g0907 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 605 IPR013083 -
Alju11g0907 606 MobiDBLite consensus disorder prediction 477 518 - -
Alju11g0907 606 MobiDBLite consensus disorder prediction 297 313 - -
Alju11g0907 606 SUPERFAMILY Kix domain of CBP (creb binding protein) 3 79 IPR036529 GO:0003712|GO:0006355
Alju11g0907 606 ProSitePatterns Zinc finger RING-type signature. 566 575 IPR017907 -
Alju11g0907 606 Coils Coil 217 237 - -
Alju11g0907 606 SMART ring_2 551 588 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0907 Alju-ChrAlju11 10772819 10789669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0907 549 604 C3H Transcription Factor Family AT5G48655 76.786 1.34e-26 105