Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0871 ATGCAGAAAACATGGCTAACAATACACAGAATAAATACAAATCACTTTATGATTGTGATAGTGGATGCTGATATCTTTTACCACAACAATGACAACTATGATGGAACAACATATTTGAAGGATCAAGCTTGCCAAGCAAAACCATCATCTGATAGTAAATTGAAGGGAGTGAAGCTTGAGCTAAAAGAAACGTGGGCAATTTTTAAAGATTTTTGTGCGATTTGTCGGGATGAGTTCAGGGAAGATGCAGTTCAAATGCCTTGTTCTCATTTCTATCACGGAAACTGTATCCTTCAATGGTTGCTGAAGAAGAATTATTGTTCCAGATGTTACTTTAAAATGCCTTCTTCAAGTGATCTCTGTAATATCTCAGCGCCTTGCTCTCGGCCTATCGTGCAACCGCTGCAATCGCGACGAAATGCTGTGCAGCCGTGTCGAGAGGCTATTCACTTTCTCTTATATTTTCTATTTAGATATAGATTTCCTAGATTTAAAATGCAACCGCGTCGGGAGGCTTTCTACTTTACCTTGTATTTTCTATTTAGATTTTTTAGATGGAATTCCATAAGTTATGGGTGA 579 0.3782 MQKTWLTIHRINTNHFMIVIVDADIFYHNNDNYDGTTYLKDQACQAKPSSDSKLKGVKLELKETWAIFKDFCAICRDEFREDAVQMPCSHFYHGNCILQWLLKKNYCSRCYFKMPSSSDLCNISAPCSRPIVQPLQSRRNAVQPCREAIHFLLYFLFRYRFPRFKMQPRREAFYFTLYFLFRFFRWNSISYG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0871 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 118 IPR013083 -
Alju11g0871 192 ProSiteProfiles Zinc finger RING-type profile. 72 110 IPR001841 -
Alju11g0871 192 SMART ring_2 72 110 IPR001841 -
Alju11g0871 192 Pfam Ring finger domain 72 110 IPR001841 -
Alju11g0871 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 115 - -
Alju11g0871 192 SUPERFAMILY RING/U-box 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0871 Alju-ChrAlju11 10325425 10326003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0871 33 116 C3H Transcription Factor Family AT5G15820 36.047 5.77e-12 61.6