Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0792 ATGGATGTTACCTCTCCAGAACCAAATAGAAACTCCCAAACCGACAGATATCCTTTGCTGATGGAGCAGTCTGAAAGCCACCATCAGCACGTAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATCTAATGCTCAACTTCCTGAAATACATTCAATGCAGAATGAAGATCAACAGTCCAGTGGTACACGAGAGTCTACTCATCAAACATCTTTCTCATCCAGATTAAACTCTAGAAATTCTTCATCAACTAGAGGTGAGGGGTATCGTCATCAAAGAAGGAATCCATTAAATTCTGGACTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCGAGGAATGAAAGTCCACAAGCCCCATTATTTGCATGGGTTGTGGGTTATACATCTGGTTGTGTTGCCACACTTCCTATTCTATTTTGGCGTTATCGAAGCCATAATCAAAGCACTGAACAAGTTACATCTCAACAATCTCAAGGATCTTCTAGAACTGATCATCCATTACCTACCTCATACACTGCTATAACCAATGCTCATGTTTCAGATGAAGAGAATAGTCATGTGACAGAATCAGCTGCTAGAAACAACAGGTTTCCTGGAGCTTTTTTTTCTAGGCTTAATGGATTAGTTGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTGTGGATCTTTGGAGGCCACTCTTCTCCTTCCGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATTCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTCTAGGAATTCAGGAAGATTTTTCTCAAACTAGAGGCGCAACAGTAGAGTCTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGTGTCAATCAGGATGTCATCACAGCTACAGATGAAGGTGGCATCTTTGCTGCCGGGGAAGAAAAAGAGCGGGCCATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCGAAATATGCTGACAATGATGATCTTAGGGAGTTACCTTGTCTTCATTTCTTCCACGTAGAGTGTGTTGACAAATGGTTGAAGATAAATGCGTCATGTCCTCTTTGTAAAAGCGATGCCGGCAAGATTAGTGGAGGGTCTGGGGACTCCAGTTAG 1248 0.4095 MDVTSPEPNRNSQTDRYPLLMEQSESHHQHVIDITRNGDALSNSSNAQLPEIHSMQNEDQQSSGTRESTHQTSFSSRLNSRNSSSTRGEGYRHQRRNPLNSGLWISVELVVTVGQIIASIVVLSLSRNESPQAPLFAWVVGYTSGCVATLPILFWRYRSHNQSTEQVTSQQSQGSSRTDHPLPTSYTAITNAHVSDEENSHVTESAARNNRFPGAFFSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIQEDFSQTRGATVESINALPIYKFKLKKTENSVNQDVITATDEGGIFAAGEEKERAISGEDAVCCICLAKYADNDDLRELPCLHFFHVECVDKWLKINASCPLCKSDAGKISGGSGDSS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0792 415 SMART ring_2 360 400 IPR001841 -
Alju11g0792 415 FunFam E3 ubiquitin-protein ligase 343 409 - -
Alju11g0792 415 MobiDBLite consensus disorder prediction 54 87 - -
Alju11g0792 415 MobiDBLite consensus disorder prediction 54 96 - -
Alju11g0792 415 SUPERFAMILY RING/U-box 353 405 - -
Alju11g0792 415 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Alju11g0792 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Alju11g0792 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 407 IPR013083 -
Alju11g0792 415 Pfam Ring finger domain 360 401 IPR001841 -
Alju11g0792 415 SMART ringv_2 359 401 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0792 Alju-ChrAlju11 9392215 9395312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0792 1 411 C3H Transcription Factor Family AT1G80400 57.416 7.89e-168 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0792 11 9392215 9395312 Alju11g0792 11 9392215 9395312 ECH