Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0742 ATGTCTGACCATCCTCAACAGTATCATCCCGCTCCTGCTCTCTCCCTCAGTCTTGCGGGAATCTTTCGCCGTAATGACGAGGCGAGCAACGCTGAGGTGGAAGAGGCCGGGGAGGAGGCCAGCGGCGGAGGAGGGCGGCGAGACAACACCGCCACTACTGTTCATGAGATTAGCAGCGAGAATTCTGGGCTCATCGGCAGATCGTCGAGATCCGACGATGGCTTATTCGACGAAGAAGCCGAGCCTGAAGGCGGCGACGATGTTGAAGGTGACGACGGAGTCAACAATAAGAAGAACAAGAAAAAGAGGAAGAGATATCATAGACACACTGCTGAGCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCGCCACATCCTGATGAGAAGCAGAGACAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAATTTTGGTTCCAAAATCGTCGAACCCAGATCAAGGCTATACAAGAACGTCATGAGAATTTATTGCTAAAGTCAGAAATTGATAAACTGAGAGAGGAAAATGAGGCATTGAGAGGGATCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTCCCCACCATTTCATCCTCAGATGCTTCCATGCCTCCTGAAGAACACCAACTTCGTGTAGAAAATGCCAAACTCAAATCTGAGATCGAGAAGCTTCGAAGAGCAGTAGGGAAGGGCCCACTGGGGATGACTACAACATCACCTTCTTCGAGCTCTTTGGGAAATGAGCAAGTAATGGAGAACAGAAGCTGTATGGAAATTTACAGTGGAATTTTCGGACTTGAGAAGACAAGGATAATGGAGCTAGTTAACAAAGCAATGGAAGAGCTCATAAAGATGGCCACTACTCAGGAACCATTATGGGTTCGTAGCGTTGAGACTGGTCGCCAAATACTTAATTACGATGAGTATGTGAAAGAGTTCAATGTTGAACACTCCTCTTCGTCGTCAAAGAGATACTCCATTGAAGCTTCGAGAGAAACTGGGGTTGTGTTTTTGGATCTCCCTCGTATTCTTCAAATCTTCTTGGACGTGAATCAATGGAAGGAGATGTTTCCAAGCTTAATATCGAAGGCTGCTATTGTTGATGTTATTTGTAGTGGTGAAGGTGCCAACAGGGATGGTGCTGTGCAATTGATGTTTAGCGAGGTGCAAATGGTGACACCAATGGTGGGGAGCAGAGAAGTGTATTTTGTGAGGTACTGCAAGCAATTGAAGGAAGAAGAGTGGGCAATAGTGGATGTATCCATAGAAAATGTACAAGACACTATTGAGGCTTCTCTCCTCAAATGCAGAAAACGCCCTTCTGGCTGCATCATTCAGGATACCAACAACGGCCACTGCAAGGTAACATGGGTGGAGCACATAGAATGTGAGAAGAGCACGGTTCACACAACGTACAGGAGCATAGTGAAGAGCGGGCTGGCGTTCGGGGCGAGGCGGTGGCTGGGGACGTTACAACAGCAATGTCAGAGACTGATGTTCGTGATGGCGACGAATGTGCCGATGAAGGAGTCGGTGGGGGTGGGGACGGTGGCGGGGAGGAAGAGCGTGATGAGGTTGGCACAGAGAATGAGCAAGAACTTCTGTCACGCCGTGGGGGCTTCAAGCTTGCACACATGGAGCAAGTATAGTGGAGAGAATGGATTAGACATAAGGGTCAACTCCAGAAAGAACTTGAATGATCGTGGAGAGCCTCTTGGTCTTATATTATGTGCTGTTTCTTGTGCCTCCCTTCCCCTCTCTCCTCGCCTTCTCGTCGACTTCTTGAGGGACGAAACTCGACGTTCTCAGTGGCAAGTGACAGCTGGCGGTGAGCACGTGCGGTCATTCGTAAACTTGGCCAAAGGAAAAGATCGAGGCAACGCCGTGACCATCATGGAAGTAAAATCGAAAGATGAGAGTAACTGTACGTGGATTCTGCAAGACAGCAGCACGAGTACGTACGAATCAACGGTGGTGTATGCTCCAGTGGACATCACCCGCATGCAGTCGGTGATCGCGGGCCGCGACTCCAGCGACGTCCCGATTCTGCCGTCTGGATTCTCCATCATCCCCGACGGACTGGAGGCCATAAGACCGTTAATGATCACTTCTTCTTCATCAATGCATGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAAAGAACACAGAAGGAGGGTCTCTGCTTACAATAGCATTTCAGGTCCTCGTCAGTACTTGTCCTTCTGATAAGCTAACACACGAGTCTCTTGAATCTGTCAGTAGCGTTATGTCTTGTACTTTGAGAAATATCAAAACAAGCTTACAGTGTAATATCTCATTCTCGATCCAGCAGGCTCCTCCCCGTGTTCTCCATCTTCCTTCAGGGGAGGTTGAGTTTTCAGCCTTGGGGTACTTTGAGTTTTCATGTTGTTTTCCAAAGGTTTCTGTAAGTAGAGTCTCCCGTTCCTCAACTCAAAGACACAGATATGCTGATTTGCCAAGTAATAATATATCCTCACTACTTCAGAACCCAAAGAAAAAAAAGGAAGAAATAATAGCAACCATGGCTTCTCTGGCAACCTTCGCTTCCGTACAACCGGCTTCCGTGAAGGGCCTCGCCGGAAGTTCCCTTTCTGGAACTAAGCTCGCCGTCAAGCCCTCTCGCCAGAGTCTTAGGCCCAGAAATTTCAGGAGTGGAGCTGTGGTGGCCAAGTATGGCGACAAGAGTGTATACTTTGATTTGGAGGATATTGGCAACACTACTGGGCAGTGGGATTTGTATGGATCTGATGCACCTTCTCCTTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCTACTCTCGCTTACTTCAGTGCCACAGCTACTGGTGATGTTCTTCCCATCAAGAAGGGCCCACAACTTCCACCTAAGCCTGGTCCACGTGGCAAGATCTAA 2991 0.4824 MSDHPQQYHPAPALSLSLAGIFRRNDEASNAEVEEAGEEASGGGGRRDNTATTVHEISSENSGLIGRSSRSDDGLFDEEAEPEGGDDVEGDDGVNNKKNKKKRKRYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENLLLKSEIDKLREENEALRGIINKACCPNCGVPTISSSDASMPPEEHQLRVENAKLKSEIEKLRRAVGKGPLGMTTTSPSSSSLGNEQVMENRSCMEIYSGIFGLEKTRIMELVNKAMEELIKMATTQEPLWVRSVETGRQILNYDEYVKEFNVEHSSSSSKRYSIEASRETGVVFLDLPRILQIFLDVNQWKEMFPSLISKAAIVDVICSGEGANRDGAVQLMFSEVQMVTPMVGSREVYFVRYCKQLKEEEWAIVDVSIENVQDTIEASLLKCRKRPSGCIIQDTNNGHCKVTWVEHIECEKSTVHTTYRSIVKSGLAFGARRWLGTLQQQCQRLMFVMATNVPMKESVGVGTVAGRKSVMRLAQRMSKNFCHAVGASSLHTWSKYSGENGLDIRVNSRKNLNDRGEPLGLILCAVSCASLPLSPRLLVDFLRDETRRSQWQVTAGGEHVRSFVNLAKGKDRGNAVTIMEVKSKDESNCTWILQDSSTSTYESTVVYAPVDITRMQSVIAGRDSSDVPILPSGFSIIPDGLEAIRPLMITSSSSMHGGGGEGEEEEEKNTEGGSLLTIAFQVLVSTCPSDKLTHESLESVSSVMSCTLRNIKTSLQCNISFSIQQAPPRVLHLPSGEVEFSALGYFEFSCCFPKVSVSRVSRSSTQRHRYADLPSNNISSLLQNPKKKKEEIIATMASLATFASVQPASVKGLAGSSLSGTKLAVKPSRQSLRPRNFRSGAVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATATGDVLPIKKGPQLPPKPGPRGKI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0742 996 MobiDBLite consensus disorder prediction 709 728 - -
Alju11g0742 996 SMART HOX_1 101 164 IPR001356 GO:0003677
Alju11g0742 996 Pfam Homeodomain 103 158 IPR001356 GO:0003677
Alju11g0742 996 CDD homeodomain 107 158 IPR001356 GO:0003677
Alju11g0742 996 SUPERFAMILY Homeodomain-like 92 161 IPR009057 -
Alju11g0742 996 Coils Coil 159 186 - -
Alju11g0742 996 Gene3D - 90 170 - -
Alju11g0742 996 SMART START_1 277 501 IPR002913 GO:0008289
Alju11g0742 996 Gene3D - 950 972 - -
Alju11g0742 996 MobiDBLite consensus disorder prediction 27 109 - -
Alju11g0742 996 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Alju11g0742 996 CDD START_ArGLABRA2_like 272 500 - -
Alju11g0742 996 FunFam Homeobox-leucine zipper protein HDG1 89 176 - -
Alju11g0742 996 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Alju11g0742 996 MobiDBLite consensus disorder prediction 46 68 - -
Alju11g0742 996 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 773 IPR042160 -
Alju11g0742 996 Pfam Photosystem I reaction centre subunit VI 860 996 IPR004928 GO:0009522|GO:0009538|GO:0015979
Alju11g0742 996 Coils Coil 211 231 - -
Alju11g0742 996 SUPERFAMILY Bet v1-like 523 697 - -
Alju11g0742 996 FunFam Photosystem I reaction center subunit VI 950 972 - -
Alju11g0742 996 Pfam START domain 278 501 IPR002913 GO:0008289
Alju11g0742 996 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Alju11g0742 996 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Alju11g0742 996 SUPERFAMILY Bet v1-like 271 501 - -
Alju11g0742 996 Gene3D - 276 501 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0742 Alju-ChrAlju11 8822654 8832833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0742 95 773 Homeobox Transcription Factor Family AT1G79840 58.540 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju11g0742 START 3e-55 CL0209