Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0730 ATGTTTAGGCTACTTGAACATGATTACATTGGCTTAGCAGAGAAGCCTTCCATGGAAATCTCTGAAAAAAGCTCACATCTCAACTTGAACTTGAAGGAGACAGAGCTCAGACTTGGCCTTCCTGGTTCTGAATCTCCAGAGAGAAAGCCAACAAACATAATATCTCTATTTGGGAAGGACTTGCAGAACACAAATGCCTTGAAGAACCTTGTTGCTGGCTCTAAGCGAGGCTTCTCTGATGATACCACTGTTGATTTTGAGGGTAAAAGAAATAATACCCACAGGGCTTCTCAATCTGCCAAACCAAGACAGGACAAGAAGCCAGAGGTTTCTGAAACAAACGAGCATGCTAGTGCTCCTTCTTCAAAGGCACAGATTGTGGGGTGGCCACCGATTCGATCCTTTCGGAGGAACACGATGGCCTGTAGCTTGACAAAGAACAAGGACGACGATGAAGAAGAAGAAGAAGAAGAGGGAAAGCCATCAGAAGCAAGTGGTTGTCTTTATGTAAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTCAGAATGTACACCAACTATGTGCAACTTTCTTCAGCTCTTGAGCAAATGTTCACTTGCTTCACCATTGGTGAATGCAATTCTGGTGCGTTTCCTGGGAAAGATGGTCTGAGTGAGAGATCTCTGAGGGATCTGCTTCATGTGTCTGTTCATGTTGTTACATATGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGATGTCCCATGGGAGATGTTCACTGAATCATGCAGGAGACTGAGGATCATGAAAGGTTCTGAAGCAATTGGGTTAGCTCCCAGGGCCATGGAAAAAAAGTGCAGAAGCCACAAAAACAATTGCAGAAGAATCAAATAG 888 0.4381 MFRLLEHDYIGLAEKPSMEISEKSSHLNLNLKETELRLGLPGSESPERKPTNIISLFGKDLQNTNALKNLVAGSKRGFSDDTTVDFEGKRNNTHRASQSAKPRQDKKPEVSETNEHASAPSSKAQIVGWPPIRSFRRNTMACSLTKNKDDDEEEEEEEGKPSEASGCLYVKVSMDGAPYLRKVDLRMYTNYVQLSSALEQMFTCFTIGECNSGAFPGKDGLSERSLRDLLHVSVHVVTYEDKDGDWMLVGDVPWEMFTESCRRLRIMKGSEAIGLAPRAMEKKCRSHKNNCRRIK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0730 295 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 274 IPR003311 GO:0005634|GO:0006355
Alju11g0730 295 ProSiteProfiles PB1 domain profile. 167 269 IPR000270 GO:0005515
Alju11g0730 295 MobiDBLite consensus disorder prediction 80 113 - -
Alju11g0730 295 Pfam AUX/IAA family 33 278 IPR033389 -
Alju11g0730 295 MobiDBLite consensus disorder prediction 78 163 - -
Alju11g0730 295 SUPERFAMILY CAD & PB1 domains 161 268 - -
Alju11g0730 295 Gene3D - 162 281 - -
Alju11g0730 295 FunFam Auxin-responsive protein 162 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0730 Alju-ChrAlju11 8660767 8662232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0730 150 277 B3 DNA Binding Superfamily AT4G23980 27.612 1.16e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju11g0730 AUX_IAA 3.2e-87 CL0072