Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0707 ATGTTAATGGAAGTACCGGAGTGTTTTTTCGGTGGCTATTTTTCAGCCGGAGGAGATCAATTCTCGTCGGAGAAGCGCCATGGTGCTGACCAGAAGCCTGGTGAGTCCTTCGCCATTGACGACCTCCTTGACTTCTCCAACGCCGACGCTATGATCATGTCCGACGGTTTCTTCGATAATGCAGCCGGAAACTCCATCGACTCATCCATTGTCACCGCCGTTGACAGCTGTAATTCTTCCATTTCCGGCGGTGACAATCATTTCTCCTCCGGTTACTCTGGCTCCCGCGGCTTCGGTGATCCTCAATTACCTGGAGAACTCTGCGTTCCGTATGACGACATCGCTGAACTGGAATGGCTATCGAACTTCGTAGAAGACTCATTTCCGGTCGAAGATGAGCTAAAAACACTCCACCTCCTCTCCGGTACCAGTGCTTCCGCCATCGGAACGAAACCTCAGACACCGGAGTCCTCCTCTTCCTCCGAAACACTTCCACCCTTCGCCGCCGACACCAGTCGAAACGCGCCGATCTTCCATCCAGAAACTCCGCTTCCAGGTAAAGCTCGGAGCAAGCGTAACCGCGTTGCCCCGGGGGATTGGTCTACGCGCCTACTCAACCTGATCACCCCGACGGTAGTTTCAGAACCGGCGCAAGCGAAGCCGGTGGCGGCGAAGAAAAGAGATAGTTCGAATTCGGAGTTTTCTTCTGGTCGGAAATGCCTGCATTGCGCCTCCGAGAAGACTCCTCAATGGCGGACTGGACCAATGGGTCCGAAGACTCTGTGCAATGCTTGTGGAGTCCGGTACAAGTCCGGGAGGCTGGTGCCGGAGTACCGACCGGCGGCGAGCCCGACTTTTATGTCGTCAGAACACTCCAATTCGCACAGGAAGGTAATGGAGATGAGGAGGCAGAAGGAATTGCAGATGCAGCAACAGCATCAATTGGTTAGCCAGAGTTCAATTTTCGGCGTTTCTCGTGGAGGAGATGAGTTCATGATCCCTCATACCAGTGGTCCAGATTATAGGCACATGATCTAG 1038 0.5376 MLMEVPECFFGGYFSAGGDQFSSEKRHGADQKPGESFAIDDLLDFSNADAMIMSDGFFDNAAGNSIDSSIVTAVDSCNSSISGGDNHFSSGYSGSRGFGDPQLPGELCVPYDDIAELEWLSNFVEDSFPVEDELKTLHLLSGTSASAIGTKPQTPESSSSSETLPPFAADTSRNAPIFHPETPLPGKARSKRNRVAPGDWSTRLLNLITPTVVSEPAQAKPVAAKKRDSSNSEFSSGRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMSSEHSNSHRKVMEMRRQKELQMQQQHQLVSQSSIFGVSRGGDEFMIPHTSGPDYRHMI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0707 345 FunFam GATA transcription factor 229 316 - -
Alju11g0707 345 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Alju11g0707 345 Gene3D - 235 319 IPR013088 GO:0006355|GO:0008270
Alju11g0707 345 MobiDBLite consensus disorder prediction 146 194 - -
Alju11g0707 345 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Alju11g0707 345 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Alju11g0707 345 MobiDBLite consensus disorder prediction 146 168 - -
Alju11g0707 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 298 - -
Alju11g0707 345 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Alju11g0707 345 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Alju11g0707 345 PIRSF Txn_fac_GATA_plant 21 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Alju11g0707 345 PANTHER GATA TRANSCRIPTION FACTOR 31 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0707 Alju-ChrAlju11 8423459 8424712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0707 35 345 C2C2-Gata Transcription Factor Family AT4G32890 46.729 3.24e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju11g0707 GATA 3.2e-14 CL0167