Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0704 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGAATGGACAACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGAATGCCCAAAACCCAGTTCCATTCGCCGCCAGCAGCTCATCCGCGAGTGCCCTATTCTTTCCAACATTGAACCCAAACAAATCAAAGTTTGGTTCCAGAACAGAAGGTGTAGAGAGAAGCAAAGGAAAGAGGCCTCACGACTTCAAGCCGTGAATAGGAAGCTGACGGCCATGAACAAACTTTTGATGGAGGAGAATGATAGGTTGCAGAAACAGGTCTCTCAATTGGTGTATGAAAATGGCTACTTCCGCCAACATACTCAAAATACTACGCTTGCAACCAAAGACACAAGCTGTGAATCAGCCGTGACGAGCGGCCAACACAGTTTGACTACTCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGACTCTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATTGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGTGCCTGTGGTCTAGTGGGTCTAGAACCCACAAGAGTCGCAGAAATACTCAAGGATCGGCCATCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGTTGCTTTATATGCAGCTATATGCCCCAACCACATTGGCTCCTGCTCGGGACTTTTGGTTGTTGCGCTATACTTCTGTTCTAGAAGATGGGAGCTTTGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCGGTGCAGCATTTTGTGAGAGTTGAGATGCTGCCTAGTGGTTACCTAATAAGACCTTGTGAAGGGGGTGGGTCTATTATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCAGAAGTGTTACGGCCTCTATATGAATCATCAACAGTGCTAGCTCAGAAGAAAACGATGGCGGCCTTACGACAGCTGAGACAGTTATCGCATGAGGTTTCTCAGCCCAATGTCACCGGGTGGGGCAGACGACCAGCGGCACTAAGAGCACTAAGCCAGAGACTTAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTAGTGATGAGGGGTGGTCAATGATTGGCAATGATGGTATAGATGACGTTACAATCATGGTTAATTCGTCTCCTGACAAGTTAATGGGACTAGATCTTTCCTTTGCCAATGGATTTCCATCCATCAGTAATGCTGTTCTGTGTGCCAAAGCGTCAATGCTATTGCAGAATGTGCCTCCGGCCATTCTCTTAAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCCGCTGCCATTAAAATTGGTCCATGTAGCTTACCAGGATCTCGTGTAGGAAATTATGGAGGGCAAGTTATACTTCCTCTGGCTCACACTATTGAGCATGAAGAGTTTCTTGAAGTGATTAAATTGGAAGGGTTAGCACATTCTCCTGAAGATGCGATCATGCCTAGAGAGGTGTTTCTTTTGCAACTCTGTAGTGGAATGGATGAGAATGCTGTTGGCACTTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCACTTTTACCTTCTGGGTTCCGCATCATTCCTCTTGATTCTGGGAAGGAAGCGTCCAGTCCGAATCGCACCCTTGATCTTGCATCTGCGCTTGACATTGGCCCCACGGGGAATAAACAATCTAATGATTATTCTGGAAACTCTGGCTGCATGAGATCTGTTATGACTATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGATCACGTTGCAACAATGGCACGACAGTATGTTCGTAGCATTATATCATCAGTCCAAAGGGTGGCGCTAGCGCTTTCTCCTTCGCATCTGAATTCTCAAGCTGGGCTTAGGTCACCGCTGGGTACTCCTGAAGCACAGACACTTGCTCGTTGGATATGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTAAAATCCAGTAATGAAGGAAATGAATCCATCCTTAAGTCCTTGTGGCATCACTCAGATGCAATTCTGTGCTGCTCTCTGAAGGCATTGCCGGTCTTCACGTTTGCAAACCAAGCAGGGCTTGATATGCTGGAGACTACGTTAGTTGCACTGCAAGACATCGTTTTGGAGAAGATATTTGATGAACACGGACGTAAAATACTCTGTTCAGAGTTTCCTCAGATCATACAACAGGGTTTTGCATGCCTTCAGGGAGGTATCTGTCTGTCGAGCATGGGGAGGCCGGTGTCGTACGAGAGAGTGGTGGCTTGGAAGGTGCTGAATGAAGAGGAGAATGCTCATTGTATCTGTTTTATGTTTATGAACTGGTCCTTTGTTTGA 2514 0.4678 MAMSCKDGKPGMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSFVICERSLKNTQNGPSMPPVQHFVRVEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKKTMAALRQLRQLSHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFSDEGWSMIGNDGIDDVTIMVNSSPDKLMGLDLSFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKIGPCSLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGLAHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALDIGPTGNKQSNDYSGNSGCMRSVMTIAFEFAFESHMQDHVATMARQYVRSIISSVQRVALALSPSHLNSQAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSSNEGNESILKSLWHHSDAILCCSLKALPVFTFANQAGLDMLETTLVALQDIVLEKIFDEHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0704 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Alju11g0704 837 Pfam MEKHLA domain 694 836 IPR013978 -
Alju11g0704 837 CDD bZIP 68 107 - -
Alju11g0704 837 Gene3D - 11 82 - -
Alju11g0704 837 MobiDBLite consensus disorder prediction 131 153 - -
Alju11g0704 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Alju11g0704 837 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Alju11g0704 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Alju11g0704 837 Coils Coil 71 112 - -
Alju11g0704 837 Gene3D - 194 374 IPR023393 -
Alju11g0704 837 Pfam START domain 160 367 IPR002913 GO:0008289
Alju11g0704 837 SMART START_1 159 369 IPR002913 GO:0008289
Alju11g0704 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Alju11g0704 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Alju11g0704 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Alju11g0704 837 SUPERFAMILY Bet v1-like 159 354 - -
Alju11g0704 837 CDD START_ArGLABRA2_like 154 369 - -
Alju11g0704 837 MobiDBLite consensus disorder prediction 131 149 - -
Alju11g0704 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Alju11g0704 837 CDD homeodomain 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0704 Alju-ChrAlju11 8405578 8412071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0704 1 789 Homeobox Transcription Factor Family AT1G52150 86.237 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju11g0704 START 5.7e-54 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0704 11 8405578 8412071 Alju05g1709 05 48303085 48309712 CCT
Alju11g0704 11 8405578 8412071 Alju11g0704 11 8405578 8412071 ECH