Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0691 ATGAATGGTAGGTCAAGAAACGAGGAGGTGTCTCCTCAGCTGCTAGATTTGATCCCAAAAGACCGAGAGTGGCATGAAAACAGAGCCGACAAGTTTTCAGAAGAGAGGAAACTTGAGCTCAGACTTGGTCCACCTGGTGAAGAAGACGACGACGTCGTTAGGGGAATAAACGAATCTCTGCTCTCTCTTAGTTACTTCTCAGCCTCCATTAATGGAGGCTACCAGAAGAAGAAGACTCAACACAAGGGGGTTTCAGTTTCATCATCATTCCTACAGCCTCAACCCTCTCCTCCTGCAAATACATCTGTACCCAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGGTGGCCACCAATTCGCTCATTTAGGAAGAACCTAGCAAGTAGTAGCACTTCCAAGGTTGTTTCTCAACATGAGCCTCAGAATCATCAGCAGCATGTGGTTGTTGAAGATAAGGTTGCTGGGAAGAAACCTATGGCTGACAACAACAACAACAAAAACGTTGTTGTTTGTGGTGGTAATAAAGGCCTGTTTGTGAAGATCAATATGGATGGAGTTCCCATAGGCAGAAAAGTGGACCTTAATGCTTACTATAGCTATGAAAAACTCTCCTCTGCTGTTGACGAACTCTTTAGAGGCCTCCTTGCTGCTCAAAGAGATTCCTGTGGTGGTGGGATTCAGAACAAGCAAGAGGAAGAGAAAGCCTTCATAGGCTTATTGGACGGAAGTGGGGAATACACTCTGGTCTATGAGGATAACGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTGTCAACAGTGAAGAGGCTGCGTGTACTGAAGAGTTCTGAGCTCTCTGCTTTTACTCGTGGTAGTAAGCAAGACAAAATTACCACTTAA 903 0.4585 MNGRSRNEEVSPQLLDLIPKDREWHENRADKFSEERKLELRLGPPGEEDDDVVRGINESLLSLSYFSASINGGYQKKKTQHKGVSVSSSFLQPQPSPPANTSVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSTSKVVSQHEPQNHQQHVVVEDKVAGKKPMADNNNNKNVVVCGGNKGLFVKINMDGVPIGRKVDLNAYYSYEKLSSAVDELFRGLLAAQRDSCGGGIQNKQEEEKAFIGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTRGSKQDKITT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0691 300 SUPERFAMILY CAD & PB1 domains 177 280 - -
Alju11g0691 300 Pfam AUX/IAA family 38 288 IPR033389 -
Alju11g0691 300 ProSiteProfiles PB1 domain profile. 179 283 IPR000270 GO:0005515
Alju11g0691 300 MobiDBLite consensus disorder prediction 126 146 - -
Alju11g0691 300 MobiDBLite consensus disorder prediction 15 34 - -
Alju11g0691 300 Gene3D - 175 294 - -
Alju11g0691 300 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 37 286 IPR003311 GO:0005634|GO:0006355
Alju11g0691 300 MobiDBLite consensus disorder prediction 79 151 - -
Alju11g0691 300 MobiDBLite consensus disorder prediction 1 34 - -
Alju11g0691 300 MobiDBLite consensus disorder prediction 79 112 - -
Alju11g0691 300 FunFam Auxin-responsive protein 175 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0691 Alju-ChrAlju11 8201065 8203846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0691 182 294 B3 DNA Binding Superfamily AT4G23980 32.743 2.96e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju11g0691 AUX_IAA 2.6e-68 CL0072