Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0650 ATGGATGGCCTTCTTTTTCCCTGGGATACTTCTGAATTTGTCTCCAATATGCCTATCTTGTGGAACACTCAACAACTAGCCATTGAAGAGGAATTAGCTGCAGGCTACTCCATGCCTAACGTATTGGATTATCATCACACAGCTCAAACAGATCATCTTTATTCAGCTTTTGATCTTGTGCCAGATTATTTTTTTGATACCGATATGGCCAACGACCAGCAACAACAACTCATCAACAATGGAGATGACGACGGGAATATTTCCATGATTCTATATGACAGCTATCGAAGAAACATAAAGAGCTTCAACAAAAACTTGAGTTCAGTTTCCTCTGGTGATAAATCTCACAAGAACAAGGACAAGGACGACGTCGTTCAGTGTCACATCAATGAAACTGAAGACACCATCTCTAAGAGAACTTCATCACTTCAAGGCAATATTTCAGAACATAATAAGATTAATCATGCAAAAAGGAGTTTCAAGCTCATTTCAGAGAACCACTATAATGCACCAAAACCCAAGAAAACAAGATGGGATAATCACAACTTGTCATCATCATCTTCTTCTTCAAACATAAATTTTCAGCAGCCAAACTCAAGCATATCATTTAATTCAAGCATTAGTCATGAGCCTGATCAAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTCAGGCCTGTGAATTTGGGGTTGGAGGTAGTGGAAAAGCCTAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACTGTAGCAGCGAGGCAAAGGAGAGAGAGAATAAGTGAGAAAATTAGGGTTTTGCAGAAGATAGTGCCTGGTGGAAGCAAGATGGACACAGCTTCAACTCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAATCTAGGGGACAGGGTTCATTATTATTCTATGAACTGTAGTAGTACTCCTTTCTCTTTTACAAACCCTAGTCGTCATTATTATAACTTTCAGCAATATTATTCCCCCCGCTGA 1032 0.3963 MDGLLFPWDTSEFVSNMPILWNTQQLAIEEELAAGYSMPNVLDYHHTAQTDHLYSAFDLVPDYFFDTDMANDQQQQLINNGDDDGNISMILYDSYRRNIKSFNKNLSSVSSGDKSHKNKDKDDVVQCHINETEDTISKRTSSLQGNISEHNKINHAKRSFKLISENHYNAPKPKKTRWDNHNLSSSSSSSNINFQQPNSSISFNSSISHEPDQEAIAQMKEMIYRAAAFRPVNLGLEVVEKPRRKNVRISSDPQTVAARQRRERISEKIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALENLGDRVHYYSMNCSSTPFSFTNPSRHYYNFQQYYSPR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0650 343 CDD bHLH_AtIND_like 250 308 - -
Alju11g0650 343 Coils Coil 288 308 - -
Alju11g0650 343 Gene3D - 254 315 IPR036638 GO:0046983
Alju11g0650 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Alju11g0650 343 MobiDBLite consensus disorder prediction 180 194 - -
Alju11g0650 343 Pfam Helix-loop-helix DNA-binding domain 259 298 IPR011598 GO:0046983
Alju11g0650 343 SMART finulus 255 304 IPR011598 GO:0046983
Alju11g0650 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 313 IPR036638 GO:0046983
Alju11g0650 343 MobiDBLite consensus disorder prediction 169 194 - -
Alju11g0650 343 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 329 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0650 Alju-ChrAlju11 7341197 7342228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0650 150 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 62.360 2.95e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju11g0650 HLH 1.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0650 11 7341197 7342228 Alju05g1758 05 48982684 48984024 CCT
Alju11g0650 11 7341197 7342228 Alju11g0650 11 7341197 7342228 ECH