Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0634 ATGCAAGATCCAACGTTATTTCAATCCATGAAGAGCCATGGATTTCCAGAACAACAAGAACAAGTCAAGTGCCCACGTTGTGATTCCACAAAGACTAAGTTCTGTTACTACAACAATTACAATCTCTCGCAGCCACGCCATTTCTGCAAGATTTGCAGAAGGTACTGGACCAAAGGAGGCACTCTCCGTAACATCCCCGTCGGAGGTGGAAGCCGGAAGAACACAAAGCGATCATCCACCAGCGCCAGGCCATTACCAGCAGCTTCATCTTCATCATCATCTTCTCCGTCGGTTTCGTCGGTCATCGGAGGCGCAGACCCGACCCGTATTTATACCGACCCGATAAGTGGGAGTTTCAGTTCGCTTCTGGCATCATCATCTGGGCATCTGGGGAGTGTTTTGGAGGGTTTGAATCCAAATGGGTCGGGTCTGAAAATAGCTGAAGGCAGTGAATTTGGGGCGAATGTGAGTTCTGTTGAACGGGTTGTGGATCCGGGTTCGGAGATGCAGAGTAATGGTGATTCGAGCTGTTGGAATAGCGATAACGAGTGGTCTAATCTTGCGATGTATACACCAGGCTCGAGCTTTCCGTAG 594 0.4933 MQDPTLFQSMKSHGFPEQQEQVKCPRCDSTKTKFCYYNNYNLSQPRHFCKICRRYWTKGGTLRNIPVGGGSRKNTKRSSTSARPLPAASSSSSSSPSVSSVIGGADPTRIYTDPISGSFSSLLASSSGHLGSVLEGLNPNGSGLKIAEGSEFGANVSSVERVVDPGSEMQSNGDSSCWNSDNEWSNLAMYTPGSSFP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0634 197 MobiDBLite consensus disorder prediction 63 102 - -
Alju11g0634 197 Pfam Dof domain, zinc finger 20 76 IPR003851 GO:0003677|GO:0006355
Alju11g0634 197 MobiDBLite consensus disorder prediction 71 102 - -
Alju11g0634 197 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 127 IPR045174 GO:0003700|GO:0006355
Alju11g0634 197 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Alju11g0634 197 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0634 Alju-ChrAlju11 7165016 7165609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0634 15 189 C2C2-Dof Transcription Factor Family AT1G51700 46.597 1.97e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju11g0634 zf-Dof 2.5e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0634 11 7165016 7165609 Alju05g1771 05 49075835 49076506 CCT
Alju11g0634 11 7165016 7165609 Alju11g0634 11 7165016 7165609 ECH