Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0617 ATGTCCATTATAGTCAAAAACCAGTTAAAACATGAATTTGCTATAAAAACACTTGGACATAGCAAATGTTTCAGAAAGGCGCTTTCTTGTATACGTGTCATCCATTTACTGGAGTGTGCAATCATCTTCTCGTGGAGACCAGGTAGGTTTAGTTTTCCCCTTTCCAGAGGGGGAGAGAGAGGGGAGACTGTTGCAGTAGAGGTTTCGTTTTGTTCGCCCTTCCTTCCAAGTGCTCCGACACCTTCAACTTCTGCACACAGAGTCGCCGCGAATCGCGTTCTTCATCAACGAATCATGAGTCGCTACGACAGTCGCTCTGGGGACCCTACTTCTTACCGTGACCGGAGAAGTGATTCGGGGCTGGGTGCTCCCACAGGTTACGGTGGCTCTGTCCACTCTTCCTCAAGCAGGAGGGATTACAATGATGGTGGATCCCCAAGGAAATTGAATTTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTATGTTGAATCACCAGAAGTGAGGGCTATGACTGAGGATGAGGTTAATGAGTACCGGCAGAAGAGGGAGATAACTGTTGAAGGTCGAGATGTGCCAAAACCAGTCAAAAGCTTTCACCTTGCTGGTTTCCCAGAGTATGTCATGCAAGAAATTACAAAAGCTGGTTTTGTTGAACCCACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATTGGAATAGCTGAAACTGGATCAGGGAAGACACTTTCTTATCTATTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTAGAACCTGGAGATGGACCAATTGTGCTAGTGTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAAGCTACTAAGTTTGGTGCATCATCTAGGATTAAGAGTACATGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGCTCGAGTCAAATCATACAAACTTACGAAGAGTTACATACCTTGTATTGGATGAGGCTGATAGGATGCTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCCCAGATTCGTCCTGACCGGCAAACATTATGCTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAGCTAGCAAGGCAGTCCCTTTACAACCCATACAAAGTGATTATAGGCTCTCAAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAGAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATTCACGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGACGTGAAGGATGTGATGTATGTAATCAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAGGGAACTGCATATACATTCTTTACTGCTGCCAATGCTAGATTTGCAAAGGAACTTATAGGTATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGTGGTGCACCTCCTCCGCCTTCAGGTTATGGAGGTTTCCGTGGGAGAGGTTATGGCAGTCGCCCGCTGAGATGA 1803 0.4598 MSIIVKNQLKHEFAIKTLGHSKCFRKALSCIRVIHLLECAIIFSWRPGRFSFPLSRGGERGETVAVEVSFCSPFLPSAPTPSTSAHRVAANRVLHQRIMSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYVESPEVRAMTEDEVNEYRQKREITVEGRDVPKPVKSFHLAGFPEYVMQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSQDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRGYGSRPLR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0617 600 SMART ultradead3 216 419 IPR014001 -
Alju11g0617 600 FunFam probable ATP-dependent RNA helicase DDX17 159 406 - -
Alju11g0617 600 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 349 357 IPR000629 -
Alju11g0617 600 Pfam Helicase conserved C-terminal domain 428 537 IPR001650 -
Alju11g0617 600 CDD DEADc_DDX5_DDX17 208 403 - -
Alju11g0617 600 Gene3D - 405 578 IPR027417 -
Alju11g0617 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 431 576 IPR001650 -
Alju11g0617 600 MobiDBLite consensus disorder prediction 99 115 - -
Alju11g0617 600 MobiDBLite consensus disorder prediction 99 152 - -
Alju11g0617 600 MobiDBLite consensus disorder prediction 574 600 - -
Alju11g0617 600 FunFam ATP-dependent RNA helicase RhlB 407 579 - -
Alju11g0617 600 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 175 576 - -
Alju11g0617 600 SMART helicmild6 456 537 IPR001650 -
Alju11g0617 600 Pfam DEAD/DEAH box helicase 221 392 IPR011545 GO:0003676|GO:0005524
Alju11g0617 600 Gene3D - 160 404 IPR027417 -
Alju11g0617 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 403 IPR014001 -
Alju11g0617 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 552 IPR027417 -
Alju11g0617 600 CDD SF2_C_DEAD 416 546 - -
Alju11g0617 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 197 225 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0617 Alju-ChrAlju11 6988742 6994074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0617 184 557 Eukaryotic Initiation Factors Gene Family AT3G19760 33.600 4.33e-73 238