LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g0582	ATGAAGGGTTTGATGTTTCAGCAACAGCAAGTAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGGGAGGCCAGTGTTTCCTCAGGCAATAGAAATGAAATTGGAATCAATTATCCTCCACAACAACAATATTTTGCTTCGCCATCATCAACTCATCAAACAACTCAGCCTCTGAAGAAAAGGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAAGTTATAGCCTTGTCTCCCAAGAGTCTTTTGGCAACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGACCAGAATCTTCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAAGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCAACTTGTGTGCACCATGACCCGGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCATTTCTGCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACTTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAACAAACCCACTTCTTCACCATCCTCAACCACCTCCCATTATAAGTTCTTCATCTCCAGCACCTTCATCTCACATTCTGAATCTCCAAACCCACCAAGATCTCCATTCTTTACAACTGAAGAAAGAGCAGCATCATCATCATCAACAACAACAACAAAGCTTCAATCTTCCTCCATGGCTAGCTCCTGGGCCATCATCATCCACCATTAATGACCTCTCTTCACCACCACCATCATCTTCAATCTTCGATCAGGACTTTTCACAAACACCTCACGGGCGCCACCATGAAAACCCTAACCCTACTTCTTCTACTAGCCTGGGTCCCACCACCCTCCTCCCTCCTCCTCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGTTGCAGAAAGCAGCACAAATGGGTTCAACCATCACCAAAACTGGCTCTGCCTCTGCCTCTGCCTCCTCCAATATGATTAGGACCCACCACCACACTCACGTGCCTCTTATTTCTCCTCCTTCTCACTCTTCTGATCCTTCTGCCACCAATTCAAGTAGTGGTAATTTTGGTCTGAATTTGTCATCACGTGAATCTGCGGTTCTTCTCCCTCCTCCTCCTCCTACTGCTCCTCCTCCTTCTTCCTTTCTTCTTCATGATGTTATGAGTTCTTTCTCTGCTACTTCTGGTGGTGGTGGGTTTGAAGGAACGTCTTTTGAGGATGCTTTTGGTGGGATTTTGAGCTCAAAGAATAATAAAGATGGAAGCTTTCTTGATACCCTTACAAAGACAACCACCATCTCCGCCGGACATCTAAGTGGCGCCGCCACCGGCGATGAGGGTGGTGGGAATGAAGGTTTGACGAGAGATTTCTTGGGTCTTACACCTCTCTCTCATAATGAGATTCTCAGCTTTGCTGGAATTGGAAACTACATGAACCCCACCTCCCATGATCATCAGAAACAATCCCAAAAACCTTGGCAAGGTTAG	1653	0.4646	MKGLMFQQQQVVVEENMSNLTSASGEASVSSGNRNEIGINYPPQQQYFASPSSTHQTTQPLKKRRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTNPLLHHPQPPPIISSSSPAPSSHILNLQTHQDLHSLQLKKEQHHHHQQQQQSFNLPPWLAPGPSSSTINDLSSPPPSSSIFDQDFSQTPHGRHHENPNPTSSTSLGPTTLLPPPPAYQPAPSPHMSATALLQKAAQMGSTITKTGSASASASSNMIRTHHHTHVPLISPPSHSSDPSATNSSSGNFGLNLSSRESAVLLPPPPPTAPPPSSFLLHDVMSSFSATSGGGGFEGTSFEDAFGGILSSKNNKDGSFLDTLTKTTTISAGHLSGAATGDEGGGNEGLTRDFLGLTPLSHNEILSFAGIGNYMNPTSHDHQKQSQKPWQG	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	392	414	-	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	262	350	-	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	388	414	-	-
	Alju11g0582	550	ProSiteProfiles	Zinc finger C2H2 type domain profile.	91	113	IPR013087	-
	Alju11g0582	550	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	48	535	IPR031140	-
	Alju11g0582	550	FunFam	protein indeterminate-domain 12-like	70	138	-	-
	Alju11g0582	550	Gene3D	Classic Zinc Finger	146	225	-	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	226	248	-	-
	Alju11g0582	550	FunFam	protein indeterminate-domain 5, chloroplastic-like	145	224	-	-
	Alju11g0582	550	Pfam	Zinc-finger double-stranded RNA-binding	91	113	IPR022755	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	273	332	-	-
	Alju11g0582	550	SMART	c2h2final6	91	113	IPR013087	-
	Alju11g0582	550	SMART	c2h2final6	132	162	IPR013087	-
	Alju11g0582	550	SMART	c2h2final6	167	187	IPR013087	-
	Alju11g0582	550	Gene3D	Classic Zinc Finger	72	138	-	-
	Alju11g0582	550	ProSitePatterns	Zinc finger C2H2 type domain signature.	93	113	IPR013087	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	19	64	-	-
	Alju11g0582	550	SUPERFAMILY	beta-beta-alpha zinc fingers	90	187	IPR036236	-
	Alju11g0582	550	MobiDBLite	consensus disorder prediction	19	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g0582	Alju-ChrAlju11	6542890	6545296	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g0582	13	537	IDZ Gene Family	AT1G55110	47.715	6.76e-139	408

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Alju11g0582		zf-C2H2_jaz	8.2e-05	CL0361