Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0545 ATGGGGCATCATTCTTGCTGCAACAAGCAGAAGGTGAAAAGAGGGTTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCTCCACTTATGGCCATGGTTGCTGGAGCTCTGTCCCTAAACTTGCTGGTCTGCAGAGGTGTGGAAAAAGTTGCAGACTGAGATGGATCAATTACCTAAGACCTGATTTGAAACGAGGAAGCTTTTCTTCTCAAGAAGCAGCACTCATCATAGAGCTCCATAGCATTCTGGGCAACAGGTGGGCTCAGATTGCCAAGCACCTACCTGGAAGAACTGACAATGAGGTCAAGAACTTCTGGAACTCAAGCATCAAGAAGAAGCTCCTTTCTCATGATCATCTCCTTGTTCCTCCTCCTTTTTCCACATTTTCAGATCATCTTCTTCTTCATCATCATGCTCCTGTTGAAACCTTCTTTCCTTCTGCAAACCCTAATAATAATAATATAAATGTCTTCCTTAACCACTCTCATCATCTTCATCAACCTGATCATCATCAGCTATACATTCCCACTCCTTCACCAATCCCACAAGCTCTCACTAATCTCCACCATCAAAAAATTGATGATGTTGTTAAAGTAGACGACATTTCCAATTATAACCCCACCAATAACAACAATGTCCTTCATGTCCAGCAGAATCCTATCTCAGAAACCACACCACCCAATAATGTTATTATTCCATCTTCATGTGAAGATGGCAATAATAATAACAATAATGATGCGTGGTCAATATTGGGTGTGAGTAATCTGAATCAAGAGAATAGTAATCAATGCAGCAAAAGTGATAATCTTCTTCATCATCTTGTTGGAGAGAAGTTCATGACGAACCCATTATTACCAGGTGGTTCCATGTTAATGCATCAGAATTATGATCCTGATGACAACTTGGTGGAATCCATTATTATGCCCAAAATCTGTGATAATAGCTTTGAGGATTATGTGTTGATGAGCAGTACTAGCACTACTACAGTCCCATCATCTTCATCATCTTCTTCTTATTCACAAGCAGACTTATTATTAGAGGACCCTCTTGCCAGAATCCATTGTTACCCATCATCTTCTGGTTTTTGTCCTCAAGATCATCAAACTCTCTCTGCAAATCAAATGGAGTACATTGATGCAATCCTATCATCTTTGCCCTCGTCCGTCGTCACAAACCCTATTGTTCCATCAAGCTTGGAGCCATGGGTGTAG 1218 0.4072 MGHHSCCNKQKVKRGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSSQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDHLLVPPPFSTFSDHLLLHHHAPVETFFPSANPNNNNINVFLNHSHHLHQPDHHQLYIPTPSPIPQALTNLHHQKIDDVVKVDDISNYNPTNNNNVLHVQQNPISETTPPNNVIIPSSCEDGNNNNNNDAWSILGVSNLNQENSNQCSKSDNLLHHLVGEKFMTNPLLPGGSMLMHQNYDPDDNLVESIIMPKICDNSFEDYVLMSSTSTTTVPSSSSSSSYSQADLLLEDPLARIHCYPSSSGFCPQDHQTLSANQMEYIDAILSSLPSSVVTNPIVPSSLEPWV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0545 405 FunFam Myb transcription factor 69 116 - -
Alju11g0545 405 Gene3D - 11 67 - -
Alju11g0545 405 Gene3D - 69 116 - -
Alju11g0545 405 PANTHER MYB DOMAIN PROTEIN 55 1 269 - -
Alju11g0545 405 CDD SANT 17 61 IPR001005 -
Alju11g0545 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Alju11g0545 405 FunFam MYB transcription factor 6 66 - -
Alju11g0545 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju11g0545 405 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Alju11g0545 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju11g0545 405 SMART sant 13 63 IPR001005 -
Alju11g0545 405 SMART sant 66 114 IPR001005 -
Alju11g0545 405 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju11g0545 405 CDD SANT 69 109 IPR001005 -
Alju11g0545 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju11g0545 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0545 Alju-ChrAlju11 5876901 5878780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0545 1 118 MYB Transcription Factor Family AT3G13890 95.763 1.12e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju11g0545 Myb_DNA-binding 7.1e-15 CL0123