Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0535 ATGCGTGGTGACCCAAGGTTTCAAATATCTCTTCTTTGCTCATCTGTTGTCTCTCTGTCGCTGCTTTTCTATCAAGCATTCAACACTCTTCCAGTTATGGCAGGTTTGGCTCCAGAAGGAACTCAATTTGATGCTCGTCAATATGATGCTAAAATGAATGAATTGCTTTCCGCTGATGGACAAGAATTTTTTACCTCCTATGATGAGGTTTATGATACTTTTGATGCAATGGGATTACAAGAAAATCTTTTGAGAGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCTATCCAACAGAGGGGAATTGTTCCTTTTTGCAAGGGTCTTGATGTCATTCAACAGGCCCAGTCTGGGACTGGCAAGACAGCAACATTCTGCTCAGGAATTTTGCAGCAACTTGATTATGGTTTAGTTCAGTGCCAGGCTTTGGTATTGGCACCAACAAGGGAGCTAGCGCAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGCGTAGGCGGCACAAGCGTTCGTGATGATCAGCGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCTGGTCGTGTGTTTGACATGCTCCGCAGGCAGTCTCTTCGTCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGACCAGATCTATGACATTTTTCAGCTGCTGCCAGGTAAAATTCAGGTGGGAGTCTTCTCTGCCACAATGCCTCCAGAGGCTCTTGATATTACCAGGAAGTTCATGAATAAGCCTGTGAGAATCTTGGTAAAGCGTGATGAACTGACCCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGATAAGGAGGAGTGGAAGCTAGAGACACTCTGTGATCTTTATGAAACACTGGCCATCACCCAGAGTGTCATTTTCGTCAACACAAGGCGCAAGGTGGACTGGCTCACCGATAAGATGCGAAGCAACGACCATACAGTATCGGCAACCCATGGCGACATGGATCAGAACACCCGTGATATTATTATGCGTGAATTTCGATCTGGTTCTTCTAGAGTTCTGATCACTACTGATCTCTTGGCTCGCGGTATTGATGTGCAGCAAGTCTCTCTTGTCATCAACTATGATCTGCCAACCCAGCCTGAAAATTATCTTCATCGAATCGGTCGAAGTGGACGATTCGGAAGGAAAGGGGTGGCTATAAATTTTGTGACAATGGATGATGCTAGAATGCTGTCTGACATTCAGAAGTTCTATAACGTAACCATAGAGGAGTTGCCATCAAATGTTGCAGATCTGCTCTGA 1338 0.4447 MRGDPRFQISLLCSSVVSLSLLFYQAFNTLPVMAGLAPEGTQFDARQYDAKMNELLSADGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRDDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTMDDARMLSDIQKFYNVTIEELPSNVADLL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0535 445 SMART helicmild6 325 406 IPR001650 -
Alju11g0535 445 FunFam Eukaryotic initiation factor 4A-II 60 279 - -
Alju11g0535 445 Gene3D - 62 280 IPR027417 -
Alju11g0535 445 Pfam Helicase conserved C-terminal domain 298 406 IPR001650 -
Alju11g0535 445 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Alju11g0535 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 426 IPR027417 -
Alju11g0535 445 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 72 100 IPR014014 GO:0003724
Alju11g0535 445 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 273 IPR014001 -
Alju11g0535 445 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 445 IPR001650 -
Alju11g0535 445 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 428 - -
Alju11g0535 445 Pfam DEAD/DEAH box helicase 97 258 IPR011545 GO:0003676|GO:0005524
Alju11g0535 445 CDD DEADc_EIF4A 76 274 - -
Alju11g0535 445 Gene3D - 281 445 IPR027417 -
Alju11g0535 445 FunFam Eukaryotic initiation factor 4A-III 280 445 - -
Alju11g0535 445 CDD SF2_C_DEAD 285 415 - -
Alju11g0535 445 SMART ultradead3 91 288 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0535 Alju-ChrAlju11 5786339 5789405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0535 33 445 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0535 11 5786339 5789405 Alju05g1861 05 50600500 50606953 CCT