Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0533 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGAGTTCGCGCCTTTCCTCACTCACCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATTAAAGCTATTATGCCTCCTCCAGTTGCTAGCATTCAAAACGCTACCTCTGCTGCTCCAGTTCGCCAAAGTGCAGCTACTGATACAGCCACTGAGGATGCCTCTCAAAAAGCGCAGGATGTGAAGAATGCTCCACGGTATAACGGAATGGTTTTTGAAGCCCTGTCAACAATAAAAGACACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTACCTCCAAATTTCAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAGGGTACAAAATTGTTACAAGATAAAAAAGGACATCCCTTCTGGGGCAAAAACACTTCCTATGAAACAAAAGGACATCTGGCAACATCAACCACAAGCCTCTAGTATAGTGCCTTCTCATGAGACCGCCAAGGATGCTGCTGATACTGCTGCCTACAGACTTGCAGAAGCTGAAAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAGGCAGAAAGGCTCGCAAAATTTGCTGAAGAAGCTGATGCAGTGTTACAACTAGCGAAAGAGATTTATGAACAATGCTCGCGTGGTGAAACTATTGTGTTGGCTTGA 837 0.448 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKAIMPPPVASIQNATSAAPVRQSAATDTATEDASQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRALSTRLRRLVAQGKLERVQNCYKIKKDIPSGAKTLPMKQKDIWQHQPQASSIVPSHETAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLAKEIYEQCSRGETIVLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0533 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Alju11g0533 278 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju11g0533 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Alju11g0533 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju11g0533 278 MobiDBLite consensus disorder prediction 86 113 - -
Alju11g0533 278 Gene3D - 2 58 - -
Alju11g0533 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Alju11g0533 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Alju11g0533 278 Pfam linker histone H1 and H5 family 118 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju11g0533 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Alju11g0533 278 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Alju11g0533 278 Gene3D - 112 201 IPR036388 -
Alju11g0533 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Alju11g0533 278 SMART sant 4 59 IPR001005 -
Alju11g0533 278 CDD SANT_TRF 6 56 - -
Alju11g0533 278 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0533 Alju-ChrAlju11 5775216 5779433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0533 1 278 Single Myb Histone (SMH) Gene Family AT1G72740 52.297 3.43e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju11g0533 Linker_histone 4.4e-10 CL0123