Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0525 ATGGATGGTGGAGCGCAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCGGGACTCATAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAGCCTGTGCTGGGCATAAACTTTGCTAGGGATGGCATGCAAGAGAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATTCATGGTTACTAGCTATCGCTTTCTACTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTGCCAACGATATTTGAAGTTGTTACGGGTGCAGCAAAGAAACAACTTAAGGAGAAGTCTTCAGGTTCAAATCACGGTGGCAATAAATCAAAGTCCAACTCTAAAGCGCGAGGTTCAGAATCTGTGGAAAAGCATCCAAAGGCTATGCAATCAAGAGACGAGGAAGAAGAACTGGATGAAGTAGATGAAGAAGATGAACATGGAGAGACTTTGTGCGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGTTGCGACATCTGTGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCATCATGCAGTAACAAGAGGACTCGTCCCTGA 765 0.4353 MDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGAAKKQLKEKSSGSNHGGNKSKSNSKARGSESVEKHPKAMQSRDEEEELDEVDEEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0525 254 MobiDBLite consensus disorder prediction 150 164 - -
Alju11g0525 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Alju11g0525 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Alju11g0525 254 MobiDBLite consensus disorder prediction 165 183 - -
Alju11g0525 254 FunFam PHD finger alfin-like protein 193 249 - -
Alju11g0525 254 Pfam PHD-finger 201 250 IPR019787 -
Alju11g0525 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Alju11g0525 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Alju11g0525 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Alju11g0525 254 MobiDBLite consensus disorder prediction 145 194 - -
Alju11g0525 254 SMART PHD_3 200 248 IPR001965 -
Alju11g0525 254 CDD PHD_AL_plant 200 250 IPR044104 -
Alju11g0525 254 SUPERFAMILY FYVE/PHD zinc finger 191 251 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0525 Alju-ChrAlju11 5654692 5658497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0525 1 253 Alfin-like Transcription Factor Family AT3G42790 73.152 9.61e-126 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Alju11g0525 Alfin 1.7e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0525 11 5654692 5658497 Alju05g1898 05 51349237 51352916 CCT
Alju05g1898 05 51349237 51352916 Alju11g0525 11 5654692 5658497 ECH
Alju11g0525 11 5654692 5658497 Alju11g0525 11 5654692 5658497 ECH