Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0524 ATGCACAGGTATGCTACATGGAGTAATGGTACAGAGAATTGCTATTTTAAAAGGAGTTTTTCTGCATTTGATGTCCAGAAATCATCTGCGTCCAGGAGTCTAAGCTTGAAAATGGGAGTTCTGCCACAACAACGTCATAATACAAAGCCATTGAGTTTTCTGTTTCAAGATCAAAATTCATCTTCTACTCAATCAACTGATCAATCTTATCCTGAAGTTGGTTCAGCGCAATCAGGTCAAGTTTCTATCCAGTGTAGCAATTCTTCTTCACATCCAAAATGTAGTGCAAGTGGAGGAGGTCTCATCAGGTCATCGCTGGGGAGTCACAGTTTTTGTTTTCCTCCTTTCCAAGTGGATCATAACCAACCAATTTCTCATATCGCATTTTGCCATGCTGAACCATGCTTTGATGGTGTATTTGCTGCATACGGGCCACAATCTAAGATTCATCAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTCGATCTGACAGAAGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTTCCGTGCCAAACTCGAAGCACAGAACAGACTCATCAAAGCTCGAAAACCATATCTTCATGAGTCCCGGCATCTGCATGCATTAAGGAGGGCTAGAGGTTCTGGTGGTCGCTTTCTCAACAGCAAGCAACTCCAGGAAGCAAACCTCAAAACAGACAGTCGCGGTGGCCTGAAAGTTTTGGAAGGTACTAGGTTGAACCTAGGTCATGGAAACATGTCAGAATCCAAGAATCATGCTGATGCAGAAAACTGCAGAGTTGGGGCATGCCCAACAGGTTCTGATATCACAAGTGCATCCAATAATAGTGATGGCGTGCATAAGTCCAGCTTCAGGCTCTCTAGTTACCCTCCTCACAACTTTGGATGGAACATGCAAGGCTACTCGGCTGATCCCAGCACTCGCGGTGGTGGGAATCAACAGCGTGTGTCTGTTCTAATGTGA 1005 0.4468 MHRYATWSNGTENCYFKRSFSAFDVQKSSASRSLSLKMGVLPQQRHNTKPLSFLFQDQNSSSTQSTDQSYPEVGSAQSGQVSIQCSNSSSHPKCSASGGGLIRSSLGSHSFCFPPFQVDHNQPISHIAFCHAEPCFDGVFAAYGPQSKIHQAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQFRAKLEAQNRLIKARKPYLHESRHLHALRRARGSGGRFLNSKQLQEANLKTDSRGGLKVLEGTRLNLGHGNMSESKNHADAENCRVGACPTGSDITSASNNSDGVHKSSFRLSSYPPHNFGWNMQGYSADPSTRGGGNQQRVSVLM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0524 334 Gene3D - 169 230 - -
Alju11g0524 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 43 290 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 SMART cbf3 168 229 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 ProSitePatterns NF-YA/HAP2 subunit signature. 174 194 IPR018362 GO:0003677|GO:0016602
Alju11g0524 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 171 226 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 ProSiteProfiles NF-YA/HAP2 family profile. 169 229 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 PRINTS CCAAT-binding transcription factor subunit B signature 172 194 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 PRINTS CCAAT-binding transcription factor subunit B signature 203 226 IPR001289 GO:0003700|GO:0006355
Alju11g0524 334 MobiDBLite consensus disorder prediction 314 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0524 Alju-ChrAlju11 5649589 5653403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0524 30 332 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.903 2.49e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju11g0524 CBFB_NFYA 2.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0524 11 5649589 5653403 Alju11g0524 11 5649589 5653403 ECH