Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0510 ATGTCCTCTCATGAACAAGCCCTAGTTTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGCGCCGTTTTGGGTCTCGCCTTGGCCTATACCGCTGTCCGGTCCGTCCTCAAACTTACGGCTAACTCCGCCGCGATTGACAAGCTTCGCGTCGCCCCTACTCTCTCCGTTTCTGACCTCCGGTCACTTGTGGACAATTCTGACTCAGACGAAAATTCCCAAGGTTGTAACAAACTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTGCCGTTGAGAGCGGCTGGAAAAGCTTAAGACCTAGTGTTTTAGTTTCTAACGAGTCTGGCGATAGCGCTGTGGCTATTCAGAGAACTCAAACGTGTATATATACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATATCCGGGCCTTATTTGTTAGAAATTTGAGGCAGCAAGAGTCTTCGTCTTTAAGAACGGTACCTTTTGTTCTCATTGATGGGGGACGACGATCTCATGCTGATTATGCTATTGTCAACTTGGAAGGCTCAAGACATCCTTTACCTCTTACTACAGTTTATCATAATTTGCAACCCACAAATGCTTCTCCTTACACATTATTGCAGGCACTTTTTGGAAATCAGTATCCGGTTGGGATACTGGATGAAGAGAAAATTCTTCCCTTGGGAAAGGATGTCTATGCTGTTGGCATATGCTGTTATAGAAATGGAGTTGCTGAAATTAAGTCATGCAAAGAGTTGCCATATTTTCTGGCCGAATTGAACAAAGATCAGATGATTGCTGAGCTCACATTTAAAACAAAGGTACTCTTTTGGAGTGGTATCATTCTCGGCTCATTGTCAGTTGGGATTCTCGGTTATGCTTTTATAAGAAACTGGAACAAGTGGAAACAAGGGAGGCTACAGAGGGAGGCTCAGCAGCAAAGGCAAGTCAACCATGGTGATGCTGAATTTGAGAATTTAGAGAATGAGATGGAAAATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTTATTCCCTGCGGGCATCTTGTGTGTTGTCAAGGGTGTGCCGTATCAGTTGAACGTAACGTGGCACCCAAGTGTCCTGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTTGAATCATGA 1167 0.4516 MSSHEQALVSLFSQLALSFDGAVLGLALAYTAVRSVLKLTANSAAIDKLRVAPTLSVSDLRSLVDNSDSDENSQGCNKLVIVRGTVEAKSAVESGWKSLRPSVLVSNESGDSAVAIQRTQTCIYTEWKGFFGWTSDIRALFVRNLRQQESSSLRTVPFVLIDGGRRSHADYAIVNLEGSRHPLPLTTVYHNLQPTNASPYTLLQALFGNQYPVGILDEEKILPLGKDVYAVGICCYRNGVAEIKSCKELPYFLAELNKDQMIAELTFKTKVLFWSGIILGSLSVGILGYAFIRNWNKWKQGRLQREAQQQRQVNHGDAEFENLENEMENVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAVSVERNVAPKCPVCRQEIRNSVRIFES 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0510 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Alju11g0510 388 SUPERFAMILY RING/U-box 329 382 - -
Alju11g0510 388 Coils Coil 306 326 - -
Alju11g0510 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Alju11g0510 388 FunFam Baculoviral IAP repeat containing 7 345 386 - -
Alju11g0510 388 Pfam E3 Ubiquitin ligase 142 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Alju11g0510 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 387 IPR013083 -
Alju11g0510 388 CDD RING-HC_SPL2-like 331 377 - -
Alju11g0510 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Alju11g0510 388 SMART ring_2 336 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0510 Alju-ChrAlju11 5460850 5464093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0510 333 385 C3H Transcription Factor Family AT3G06140 39.623 2.98e-06 47.0