Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0438 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGTTGCGGCCGCCGGGAGAGGAGGAGGAAGGGCTCGAAGGCTCACCGCCGATTACCTGTGGCCTGATTTGAACAAGCTTGTGTCTGGTAGGAGGTTTTCCAAGCCACTGAAGCCTGAAACTGTCATCGACTTGGACGATGATTTTGAAGCCGATTTCAGGGAATTCAAGGACGATTCCGATATCGATGTAGATGGAGATGATGATGATTTGATGATTGATGTCAAACCCTTTGCTTCGTCCGCCATTAAGCCCTCTAAGAAGGCCCTGTCTCGTGGATCTGCTGCTGCAAAACCTGAGAAATCTGATGGGCAAGCTGAGAAGTCATTGAAAAGGAGGAGGAAGAATCAATACAGGGGAATCCGCCAGCGTCCATGGGGTAAATGGGCAGCTGAGATCCGCGACCCAAGAAAGGGAGTTCGTGTCTGGCTCGGAACCTTCAACACCGCTGAAGAAGCTGCAAGAGCCTATGATGCTGAGGCAAGAAGGATCCGTGGCAAGAAAGCCAAAGTCAACTTCCCTGATGAGGTCCCATCAGGCCCTTCATCCAAGCGTCTCAAGACCAAAGTGGAGAAATCGCATCCAAAGGCCAATCTGAACTCTGTTCAGCCCAACTTCAATGTTGGAAACAATTTGGAGGACTATTACTACTCTATGGGTCTGATGGAACAGAAACCACAGATTAACCACTTTGCTGCTGCTGCTAACATGGGATCCTTCCCTGAGACTAACGTTAACAATGTGGTCCCATCACATTCATCACCTGATGATGTCACTGTTTATTTCAGCTCTGATCAGGCGAGCAACTCATTCGAGTACTCAGACTTTGGATTTGGGGAACAGGCTCCAAAGACCCCAGAAATCTCATCCATGCTTTCTAGTGAATCTCAGTATCTGCAAGATTCCAACCAGAACACCACTGCCAACAACAACATGCAATACTCAGACTCTGAGAATGTGGTCCCTGCTGGGAATGGTTCCGGAAAGAGTCTGTCGGATGAACTTGCTGACATTGAATCCCAACTGAAGTTCTTTGAGGCACCATACCTTGAAGGAAGCTGGGATGATGCTTCACTGGGAAGCCTGCTTGGTGGAGATGCAACACAGGATGCTGCTAATAACCCAATGAGCCTCTGGAGCTTTGATGACCTTCCTCCATCCATGATGGGGGGACTACAAGAATGGTTTGTCACCTGTGTTGGAGATGGTGTGAGAGAAAGTAAAACCCGCTTAAGCATTGTGTGGAGGTTGTTCACTGGTAGCTGA 1308 0.4908 MCGGAIISDFIPAAAVAAAGRGGGRARRLTADYLWPDLNKLVSGRRFSKPLKPETVIDLDDDFEADFREFKDDSDIDVDGDDDDLMIDVKPFASSAIKPSKKALSRGSAAAKPEKSDGQAEKSLKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVPSGPSSKRLKTKVEKSHPKANLNSVQPNFNVGNNLEDYYYSMGLMEQKPQINHFAAAANMGSFPETNVNNVVPSHSSPDDVTVYFSSDQASNSFEYSDFGFGEQAPKTPEISSMLSSESQYLQDSNQNTTANNNMQYSDSENVVPAGNGSGKSLSDELADIESQLKFFEAPYLEGSWDDASLGSLLGGDATQDAANNPMSLWSFDDLPPSMMGGLQEWFVTCVGDGVRESKTRLSIVWRLFTGS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0438 435 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 MobiDBLite consensus disorder prediction 288 345 - -
Alju11g0438 435 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 MobiDBLite consensus disorder prediction 300 340 - -
Alju11g0438 435 MobiDBLite consensus disorder prediction 100 132 - -
Alju11g0438 435 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Alju11g0438 435 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Alju11g0438 435 CDD AP2 131 189 IPR001471 GO:0003700|GO:0006355
Alju11g0438 435 PANTHER DNA-BINDING DOMAIN 111 307 IPR044808 GO:0003700|GO:0009873
Alju11g0438 435 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0438 Alju-ChrAlju11 4573630 4576275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0438 1 406 AP2-EREBP Transcription Factor Family AT1G53910 45.388 3.98e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju11g0438 AP2 2.4e-12 CL0081