Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0422 ATGTCCAATTCCGGCGACGCCATTCCCATGTCCCAGAAGAAGAAGAAGAAGCTCTTCTTCTTTGCCCTCCTCACTACTCTGCTCCTCGTCTCCGCCGTCGTTGGCATTGTCGCCGGAGTTAACTCCCGCAAAAACTCCGCCGCCGACAACATCCACTTCACCCCTTCCCACCACCTAGTCAAAACCGCCTGCAGTTCCACTTTATTCCCTGAACTCTGCTTCTCCACCATTACCGCCGAGCCCGGCTTCGCCGACAAAGTGTCCACCCATAGAGACGTCATAGAACTCTCCCTCAACATAACCATCAGATCCGTTGCACATAATAGGTTAAACATTGACAAAATCCGAGCAAAAAAAGGCCTGAGCAGGAGACAGAAAGTCGCTCTTCATGATTGCATAGAAACCATTGTAGACACTATCTTCGAGCTCCGTCGTGTCATCTCCAACCTCAAATACTCCTCGAATCGCGCCGAGGACATTAGAACTTTCCTCAGCACCGCCATTACCAACCAAGAAACCTGCCGGGACGGGTTCGCCCACAACGCCGCCGATAAGCACGTGAGAAGAGGACTGGACGACGGGCAAGTGCACGTGGAGCGCTTGTGTAGCAACGCGCTGGCGATGTTTAGGAACATGACTGACCATGAAGTGCCTGGCGGCCGGAGAAATGACAGGAACGTGATGGAGATGGTGGAGGTGGACGGCGGTACATGGCCGGCGTGGATGACAGCGGAGGATAGGAGGCTTCTGCTGTCGGAGTCGGAGGCGGTGACTCCGAACGTCGTGGTGGCTGCTGATGGGAGTGGGAAATATAAGACGGTGTCGGAGGCGGTGGCGGCGGCGCCGTCGGGGAGTAGCACGAGGTATGTGATAAGAATAAAGGCTGGAGTGTATAGAGAGAACGTGGAGGTGCCGAGTTCAAAGACGAATATAATGTTTATGGGAGACAGCAGAACTAATACTATCATCACAGGAAGCAGAAATGTGGTAGATGGAAGCACCACTTTTAACTCAGCAACTGTGGCTGTAGTAGGAGACGGATTCCTGGCTCGAGAAATAACCTTCCAAAACTCAGCCGGACCAACAAAGGAACAAGCGGTGGCTCTGCGTGCCGGATCAGATCTCGCCGCCTTCTACCGATGCGCCTTCCTAGCTTACCAGGACACCCTCTACGTCCACAGCAACCGCCAGTTCTTCACTGACTGCACTGTCGTCGGCACCGTCGACTTCATCTTCGGCAACTCCGCCGTCGTCTTACAGAACTGCGACATCCGCCCTCGCCTCCCCCTCACCGGCCAGCAAAACATGGTCACCGCTCAAGGAAGAACCGACAAAAACCAGAACACCGGCATCGTCATCCACAACTCCAAGATCAGCGCCAACTCGGATCTAGAGCCACACAAGGGAAGTGTGAAATCGTACCTTGGTAGGCCATGGAAGGATTATTCGAGGACAGTGATAATGAAGACTAAAATAGACAATGTGATAGACCCAGCAGGGTGGCACTATTGGGAGGACAAGAACGAAAGCAAGCTGAACACTTTGTTCTATGGCGAGTATCAGAACACTGGAGCTGGTGCTGATACTTCTAACAGAGTTAACTGGAAAGGCTTTAAGGTTATTACCAGTGCTTCTGAGGCTCAAGCTTATACTGTTCAGAACTTCATTTCTGGCTCAAATTGGTTACCCGCTACTGGATTTCCATATACTCTTGGCCTATAA 1722 0.5226 MSNSGDAIPMSQKKKKKLFFFALLTTLLLVSAVVGIVAGVNSRKNSAADNIHFTPSHHLVKTACSSTLFPELCFSTITAEPGFADKVSTHRDVIELSLNITIRSVAHNRLNIDKIRAKKGLSRRQKVALHDCIETIVDTIFELRRVISNLKYSSNRAEDIRTFLSTAITNQETCRDGFAHNAADKHVRRGLDDGQVHVERLCSNALAMFRNMTDHEVPGGRRNDRNVMEMVEVDGGTWPAWMTAEDRRLLLSESEAVTPNVVVAADGSGKYKTVSEAVAAAPSGSSTRYVIRIKAGVYRENVEVPSSKTNIMFMGDSRTNTIITGSRNVVDGSTTFNSATVAVVGDGFLAREITFQNSAGPTKEQAVALRAGSDLAAFYRCAFLAYQDTLYVHSNRQFFTDCTVVGTVDFIFGNSAVVLQNCDIRPRLPLTGQQNMVTAQGRTDKNQNTGIVIHNSKISANSDLEPHKGSVKSYLGRPWKDYSRTVIMKTKIDNVIDPAGWHYWEDKNESKLNTLFYGEYQNTGAGADTSNRVNWKGFKVITSASEAQAYTVQNFISGSNWLPATGFPYTLGL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0422 573 Gene3D - 254 573 IPR012334 -
Alju11g0422 573 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Alju11g0422 573 FunFam Pectinesterase 254 573 - -
Alju11g0422 573 PANTHER PECTINESTERASE 29 563 - -
Alju11g0422 573 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857
Alju11g0422 573 FunFam Pectinesterase 56 213 - -
Alju11g0422 573 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Alju11g0422 573 SMART PMEI_2 55 208 IPR006501 GO:0004857
Alju11g0422 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 213 IPR035513 -
Alju11g0422 573 CDD PMEI-like_3 62 213 - -
Alju11g0422 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Alju11g0422 573 NCBIfam pectinesterase inhibitor domain 32 212 IPR006501 GO:0004857
Alju11g0422 573 Pfam Pectinesterase 260 558 IPR000070 GO:0030599|GO:0042545
Alju11g0422 573 SUPERFAMILY Pectin lyase-like 256 572 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0422 Alju-ChrAlju11 4435648 4440832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0422 13 573 Carbohydrate Esterase AT3G14310 56.293 0.0 627