Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0421 ATGAGCAAAACCAAACAAGACTCCGACGGAATATCCCTTTCCGGCAACCGTATTACCATGTCCAAGAAGAACAAGAAGCTCTTCTTCTTCTCTCTCGTGGCCACTCTACTCCTTGTCTCCGCCATCGTCGGTATTGTTGTCGGAGTTAACTCCCGGAAAAACTCCGGCGGCCTCCACAATGTTCATTTGAGCACGGCACACGCCATCGTCAAAAGCGCGTGTAGTTCCACCATGTACCCTGAACTCTGCTTCTCCGCCGTCGTGGCCGAACCGGGCTTCGCCAAGAAAGTCACCACCAACAAAGACGTAATAGAACTGTCTCTCAACATAACCATCAGAGCCGTACAACACAACTACTTCGCCGTCAAGAAACTTGTCCAAAACAGAAAAGGCCTTACAAAGAGAGAGAAAACCGCTCTTCACGATTGCTTAGAAACCATTGACAACACTCTGGACGAGCTTCACCGGGCCATTGCCGACCTCGAAGACTCCACCCATCATCACGCCGACGACCTCAAGACTCTCATCAGCGCGGCCATAACTAACCAAGAGACCTGCCTTGATGGCTTCTCCCACGAAGGCGCTGATAAACACGTGAGAGAAGAGCTGATTGACGGTCAACTTCACGTGGAACACATGTGCAGCAACGCGCTGGCGATGATCAAGAACATGACGGACGGTGAAGCGTCGTATAGAAAACTGAGAGAACTGGATGAAGTAGCCGACGACGAGTTGAATTGGCCGGAGTGGATGTCGGCAGGAGACAGGAAGCTTCTGCAGGCGACGACGGTGACTCCAAATGTGGTGGTTGCGGCAGACGGGAGTGGGAATTTTAGGACGGTGTCAGAGGCGGTGGCGGCAGCACCGGAGGGGAGCAAGACGAGGTATGTGATAAGAATAAAAGCAGGGGTGTACAGAGAGAACGTGGAGGTGACGAAGAAGAAGACGAATATAATGTTTGTTGGAGATGGAAGAACCAGCACCATCATTACCGGCGACAGAAACGTCGTCGATGGAAGCACAACCTTTCACTCGGCCACTGTAGCCGTTGTAGGAGAACGATTCTTGGCTCGAGACATAACCTTCCAAAACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCAGGGTGGGCGCCGACCTCTCCGCCTTCTACCGGTGCGACGTGCTGGCCTATCAGGACTCACTCTACGTCCACAGCAACCGCCAGTTCTTCGTGAGTTGCCTAATAGCAGGCACTGTCGACTTCATCTTCGGCGACTCCGCCGTCGTCTTACAAAACTGCGACATCCACGCCCGCCGCCCCAACCCCGGCCAGAGAAACATGGTCACCGCACAAGGAAGAGTCGACCCTAACCAGAACACCGGCATCGTCATCCAAAACTGCAGAATCGGTGCCACTCAGGATCTGTTGGCAGTGAAGGGGAGCTTTGAGACGTACCTGGGGAGGCCATGGAAGGAGTATTCGAGGACAGTAATAATGAAGAGTGAAATAAGCGACGTGATACACCCAAGTGGGTGGTTCCCTTGGGATGGGAATTTTGCATTGAACACTCTGTTCTATGGGGAGTATCAGAATACAGGACCTGGTGCTGATACTTCAGCAAGAGTTAACTGGAGAGGATTTAGGGTTATTACCAGTGTCACTGAAGCTCAAAGTTTCACTCCTGCTAACTTCATTGCAGGCTCAAGCTGGTTGCCTTCTACAGGCTTCCCTTTCACACTTGGCCTCTGA 1737 0.5256 MSKTKQDSDGISLSGNRITMSKKNKKLFFFSLVATLLLVSAIVGIVVGVNSRKNSGGLHNVHLSTAHAIVKSACSSTMYPELCFSAVVAEPGFAKKVTTNKDVIELSLNITIRAVQHNYFAVKKLVQNRKGLTKREKTALHDCLETIDNTLDELHRAIADLEDSTHHHADDLKTLISAAITNQETCLDGFSHEGADKHVREELIDGQLHVEHMCSNALAMIKNMTDGEASYRKLRELDEVADDELNWPEWMSAGDRKLLQATTVTPNVVVAADGSGNFRTVSEAVAAAPEGSKTRYVIRIKAGVYRENVEVTKKKTNIMFVGDGRTSTIITGDRNVVDGSTTFHSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYRCDVLAYQDSLYVHSNRQFFVSCLIAGTVDFIFGDSAVVLQNCDIHARRPNPGQRNMVTAQGRVDPNQNTGIVIQNCRIGATQDLLAVKGSFETYLGRPWKEYSRTVIMKSEISDVIHPSGWFPWDGNFALNTLFYGEYQNTGPGADTSARVNWRGFRVITSVTEAQSFTPANFIAGSSWLPSTGFPFTLGL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0421 578 FunFam Pectinesterase 66 225 - -
Alju11g0421 578 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
Alju11g0421 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 225 IPR035513 -
Alju11g0421 578 CDD PMEI-like_3 72 225 - -
Alju11g0421 578 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Alju11g0421 578 Coils Coil 144 164 - -
Alju11g0421 578 SUPERFAMILY Pectin lyase-like 262 577 IPR011050 -
Alju11g0421 578 FunFam Pectinesterase 261 578 - -
Alju11g0421 578 Pfam Plant invertase/pectin methylesterase inhibitor 69 220 IPR006501 GO:0004857
Alju11g0421 578 Gene3D - 261 578 IPR012334 -
Alju11g0421 578 Pfam Pectinesterase 267 563 IPR000070 GO:0030599|GO:0042545
Alju11g0421 578 PANTHER PECTINESTERASE 42 568 - -
Alju11g0421 578 SMART PMEI_2 65 220 IPR006501 GO:0004857
Alju11g0421 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 225 IPR035513 -
Alju11g0421 578 NCBIfam pectinesterase inhibitor domain 66 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0421 Alju-ChrAlju11 4425476 4434371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0421 22 578 Carbohydrate Esterase AT3G14310 67.466 0.0 777