Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0417 ATGGGTGACTCGTCAGTGTCTAATGACAAATTGGGCGAATCTCCCGCGGTTGAAGTGACTGGAAAAATCATGGTGCTAGCTATAATAATCCTCTTCATGGTGGTTGTGTTTGTTCTGTTTCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAGAAACCACTCCTCCGCCGCCAACTCGCCGTCGCCGTCGACGCCGCTTTGTCTTCACCCCTGGGCAAGATCCGGCGATTTACGGCGGCCAGAGAAGTGGGCTTGATCCTTCAGTGCTTCTGTCCTTACCAGTTTTAGTGTACCAACCTGAAAATTTCAAAGATGGTTTGGAATGTGCTGTTTGTCTCTCTGAGCTTGTTGAAGGAGAAAAAGCGAGGCTTTTACCCAAATGTAATCATGGGTTTCATGTGGATTGTATAGATATGTGGTTTCAATCACATTCTACTTGTCCACTTTGCAGAAACCCAGTTGCTTCTGAAACCCCTAAATGCAATAGCACTTCAAGTGTTCGAGAAAATGCCGCAGAGAATAGTGGTAGCCAATCACGAGCGGTAGAAAATTTTCAAAACTCAGGTTTAGCTGCTATGAGTGGTTCAGAGTCTCCAAATTTTCCAACTAATGTGTTGGTTTGGGGGAACCAGACTCAAGTTAGTTCTATTAATACGTCTTCGGAAGAAGAGGGACCTTCATCTTCTTCTACAACTACAGCTACCAGTAGCAGTAACAACAACAACAATAGACGCCATGAAATGATGGTGATTGATATACCAAGTGAGGTCAATTCTTCATCTTTATCTCCTTCTGCAAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATGACCACAAGATTGAGGTCACTGAAGAGGCTTTTAAGCAGAGACAAAAGGTTAGGTCCTTGTAATCCTGGTCCTGGCTCTATAGATGTTGAACAAGCAGGGAGAGGACAAAGCTAA 954 0.4444 MGDSSVSNDKLGESPAVEVTGKIMVLAIIILFMVVVFVLFLHLYAKWFWWSIEETTPPPPTRRRRRRRFVFTPGQDPAIYGGQRSGLDPSVLLSLPVLVYQPENFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASETPKCNSTSSVRENAAENSGSQSRAVENFQNSGLAAMSGSESPNFPTNVLVWGNQTQVSSINTSSEEEGPSSSSTTTATSSSNNNNNRRHEMMVIDIPSEVNSSSLSPSASRFAEDELKSPMTTRLRSLKRLLSRDKRLGPCNPGPGSIDVEQAGRGQS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0417 317 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Alju11g0417 317 SMART ring_2 111 152 IPR001841 -
Alju11g0417 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 162 IPR013083 -
Alju11g0417 317 FunFam RING-H2 finger protein ATL3 80 158 - -
Alju11g0417 317 MobiDBLite consensus disorder prediction 217 248 - -
Alju11g0417 317 Pfam Ring finger domain 110 153 IPR001841 -
Alju11g0417 317 MobiDBLite consensus disorder prediction 158 182 - -
Alju11g0417 317 MobiDBLite consensus disorder prediction 217 317 - -
Alju11g0417 317 CDD RING-H2_EL5-like 110 153 - -
Alju11g0417 317 SMART FANCL_C_2 107 161 - -
Alju11g0417 317 MobiDBLite consensus disorder prediction 276 295 - -
Alju11g0417 317 SUPERFAMILY RING/U-box 94 159 - -
Alju11g0417 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0417 Alju-ChrAlju11 4407161 4408114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0417 1 295 C3H Transcription Factor Family AT1G53820 43.408 2.43e-71 221