Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0398 ATGGAATTGCTGATGCAAGATGTCAAAATGCATTCTGACGATAAGGAAGAAGACGAGGAGGAGGAGGAGGAAGAAGAAGACGAAGCAGAGATTGTTAGAGAGGAAAGCAGCAGCAACAGTAAGAATAATAATTACCTTCATTTCTCGCCAAATTACGAAACTAGTACTCATCGTCGTCTTCATCAAAATTCATGGTTGGGGCTTCATCATGATCACCATCACTCTCCAGATGCTACCACCACCACCGTCGAATCTCACAATTCATCGCCTCGATTAGGGTTAGCATCAGCACCGACCACCAATTTCACCACCAATCACAGAAAACAGGACCTCATGGAGTTATCGCTTGGAGGAATTGGAATCGGAAAAGACAGTGAAGAACAAGAAGAAGGTAATTTCCAAGGAGGAGGTAGCGGCGGCGCCGGTGACGAAGTTGGTGGTCCTGTTATTGAGAAAGAGCACATGTTCGATAAAGTGGTGACTCCGAGTGACGTAGGCAAGCTCAACCGCCTCGTGATACCAAAGCAACACGCAGAGAAGTACTTCCCTCTGGATTCATCCTCCAACGAGAAAGGCCTGCTGTTGAATTTCGAGGACAGCAACGGCAAGCTATGGCGGTTCCGGTACTCATACTGGAATAGTAGCCAGAGCTATGTCATGACCAAAGGTTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGACGCCGGAGACATTGTCTCGTTCCACCGTGGCGCCGGCGAGTCGTATCGGCACCGGTTGTACATAGATTGGAGGCGAAGACCTGATCACCACGGCCCACCCTGTGGCCCTGATCCCAACCTGTTTGCACCTTTTCTTCTCCATCATCCGAATCAGTACCATCCGAACCAGCCGACGGCGCAATTTTCTCAGTACTCTATCAGATGGGGCGGCCGATTGTTCTCGCTTCCCTCTCCGGCGCAGCCGCCGCGACAGGTGAACCATAGTAATATGTTTCCCTCATATCATCATCAACAGCAACAAGAGCGACATCATCATAATCCATGGCAGTTCCAAGTCCATCATCATAATGCGATGAATTCGAGATCTGCAGGTTCGATGTATTCAAACTTGATAGGGCAACAAGAAGTAAGAAATGCTCCGATGATTATAGATTCTGTTCCAGTTGATCATTATCATTCTCATCAAAACTATTACCATGGCAAAAATAGTAGTACCACTACTAATAATACTGCTACTGCTGGTAAAAGACTTAGGCTATTTGGGGTGAACATGGAGTGTGCTTCTTCTTCATCGTCGTCTTCTTCATCACCATCAGTAGTGGAAGAATCCAGATGTTGTAATGTGACAGTAATGGCTAATCCATCAATTTCATCTTCGTCTTCTTCTATTATCCCGCCGCCTCTTCATCAGTACCTGAGGGTACCCCAGGAGGATCCAATTTCTTCGTCGTCGTCCTCGGCTTTGTTATCATCAGCAAGATTTCAGAGTAGTCATCATCATCATCAGAAAGGGGAAACTTCGATGTTTTTTGATTTGGATCCCTCTTTGCATTACAGGCAGTGA 1545 0.4686 MELLMQDVKMHSDDKEEDEEEEEEEEDEAEIVREESSSNSKNNNYLHFSPNYETSTHRRLHQNSWLGLHHDHHHSPDATTTTVESHNSSPRLGLASAPTTNFTTNHRKQDLMELSLGGIGIGKDSEEQEEGNFQGGGSGGAGDEVGGPVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDSNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGAGESYRHRLYIDWRRRPDHHGPPCGPDPNLFAPFLLHHPNQYHPNQPTAQFSQYSIRWGGRLFSLPSPAQPPRQVNHSNMFPSYHHQQQQERHHHNPWQFQVHHHNAMNSRSAGSMYSNLIGQQEVRNAPMIIDSVPVDHYHSHQNYYHGKNSSTTTNNTATAGKRLRLFGVNMECASSSSSSSSSPSVVEESRCCNVTVMANPSISSSSSSIIPPPLHQYLRVPQEDPISSSSSSALLSSARFQSSHHHHQKGETSMFFDLDPSLHYRQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0398 514 CDD B3_DNA 154 243 IPR003340 GO:0003677
Alju11g0398 514 SUPERFAMILY DNA-binding pseudobarrel domain 153 260 IPR015300 -
Alju11g0398 514 ProSiteProfiles B3 DNA-binding domain profile. 156 259 IPR003340 GO:0003677
Alju11g0398 514 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 430 IPR044800 GO:0003700
Alju11g0398 514 SMART B3_2 156 261 IPR003340 GO:0003677
Alju11g0398 514 MobiDBLite consensus disorder prediction 68 102 - -
Alju11g0398 514 Pfam B3 DNA binding domain 156 260 IPR003340 GO:0003677
Alju11g0398 514 Coils Coil 1 37 - -
Alju11g0398 514 MobiDBLite consensus disorder prediction 14 32 - -
Alju11g0398 514 FunFam B3 domain-containing protein 149 267 - -
Alju11g0398 514 MobiDBLite consensus disorder prediction 80 102 - -
Alju11g0398 514 Gene3D - 149 265 IPR015300 -
Alju11g0398 514 MobiDBLite consensus disorder prediction 1 50 - -
Alju11g0398 514 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0398 Alju-ChrAlju11 4187376 4188920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0398 141 423 RAV Transcription Factor Family AT2G46870 51.203 2.56e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g0398 B3 2.7e-28 CL0405