Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0397 ATGGGGGATGGGAGTATTAGGGTTTCAGGGAAAGTTGAGGATGACCCAGTAGTTCCTCGCTCCTCAACTTCCTACTGGCTGGATGCCGTTGAGGACATTTCCTGCGATCTCATTCACTTTGATGATAGGTCCATAGTCTCTGAACAGGTCGATAACAATTTGATACAGGATGGACTGGTTAATGATTTCTTCGGCGGCATTGATAGCATTCTTGACAGTATTAAGAACGGTAGTGGCCTCCCTGTAGCCCCTGAGACTGGAAATGGAAACAAAGACTTATCATTGGCACTGCAAGCTGAAATCTCCGATCAGAAAGATAATATTGTGAAGAATGGGTTGGCTGGTGAAAAACATGATCGTACTGTTGAAGTGTGTGAGCGTTCAGCAGCTGAAAGTAATGGGTATAAAATATCTAATGGCAATGAAGGGAGAGCTTTGGGCGATTCTAAGGAAAATGGAGATGGTGATCTATCTAGGGAGCATCATGTGGATGGTGAAGAAAGATTTGGCAAGAGGGCTCGGCTTGGCAGTTATAAGAATGAGAGGCTTTATCCTGGCAGAGGGAATTACCACCCCAAGGAGAGGGAGAGGGGTCCTAATAGAAAGAGGCCCCGGGAGTGGGATGAGGTTTATAGGAAGGAAAAAGATAGTTTGAGGAGAAGAGAAAATTTACATGGTTGTGGTAGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAAAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCCATGACATGGTCTTTCGCTTAGGCACTTGGGAAGCTGATCGGCATCGAGAAGGTAAGGTAACTAATGACACTAAACAAGAAAGCAATGGAAAGACTGAGACTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAGGCTAGAAAGTACCAGTTAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGGGCAGGGAAGACCCTCATTGCTGTTCTACTCATGAAAAGTATTCATGAGAATTTACAAAAGCATAATAAAAAAATGCTTGCCGTATTCTTGGTTCCCAAAGTACCACTTGTTTATCAGCAAGCAGAAGTAATTCGAGAGCGAACTGGCTACCACGTGGGTCACTACTGTGGAGAAATGGGACAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTTGAGACAAAACAGGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTCTATCATACAACACCCAAAGAGAAGAGACCGTCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAAGGTGTATCCAGCCAAGTGGATTGTGCAATAAAAATTCGGAATCTTGAAAGTAAGTTAGATTCTGTAGTTTGTACCATCAAAGATCGTAAGGAGCTGGAGAAGCATGTACCAATGCCTTCTGAAGTTGTTGAGGAGTATGATAAAGCAGCCAGTTTGTGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAATCAAGTTCAAGAAGAAGTAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAAAGAAGAGCTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTGATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGTCAGTGGTGTGCTTATAAGGTTGCACATTCTTTTCTGTCGGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAAACCTATCTGAATAAAGTTGTGTCTCTTCTACAATGTCAACTGTCAGAGGGTGCAGCGTCTGAAAAGAATGCTGGAGCTTCTGACACGGAATGTGGCAAGGCACAGGGTGGTTCTGAACCTGATGAGATTGAGGAAGGGGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCATTATTGGAGCTGCTGTGGCAGATGGCAAGGTGACCCCTAAGGTTCAGGCTCTGATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCCTTAGTTCTACCCAAGGTTTTTGCGGAGCTTCCATCTCTGAGTTTTGTTAAGTGTGCGAGTTTGATTGGCCACAACAATAGTCAGGAAATGAGAACCTCACAGATGCAGGATACAATTGCTAGGTTCCGTGATGGACGAGTTACATTATTAGTTGCCACCAGTGTTGCTGAAGAAGGCCTTGATATACGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCTAGAGGTCGTGCCAGAAAGCCTGGGTCTGACTATATCTTGATGGTTGAGAGGGGGAACTTGTCGCACGAAGCATTTCTGAAGAATGCCAGGGATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTTATTTCAGTAGATACAAGACCAGGAACTGTTTACCAGGTGGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCAGTTGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAATTTATAATGGAGAAGCATGAACAACCAGAAGGTCCCACTGAATATTCTTGCAAGCTTCAATTGCCGTGTAATGCACCATTCGAAAATCTTGAGGGTCCCATATGCAGTTCAATGCGCCTTGCTCAACAGGCTGTTTGTCTAGCTGCTTGCAAGAAGCTGCATGAGATGGGAGCGTTCACTGACATGCTATTGCCAGACAAAGGAAGTGGAGAAGAAAAAGAAAAGGCTGAACAAAATGATGAAGGAGATCCACTTCCAGGGACTGCTAGGCACAGAGAGTTTTATCCTGAAGGTGTGGCGGATGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAGCAATTCCAAAGTGCTTCATCTTTATATGTATGCTGTTATGAGCGAAAACATAGGCCATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGAACCATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATTTCTGAGAGTCAGTTGGCATCCTTTAAAAGCTTTCATGTAAGATTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACTCCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAATGGTTAGCGATAAGTCTCTAGATCTTATGAACCAAATTGATTGGCACCTGGTTGAGACAGTAATTGAAACAGATGCATGGAAAAATCCACTTCAGAAGGCTCGACCAGATGTTTATCTTGGCACAAATGAGAGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAACCACACCCAACCTATGGAATCAGAGGAGCTGTTGCACAGTTTGATATAGTAAAAGCTTCAGGATTGGTTCCTAATAGACAAGCCATGCCAATGCAAAAGCATAATAGTAAGACTGTTCAAGGGAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAGGATAGTTACAGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAGTACGCTATGATATGACTGCAGAGAACTCTTTTCCTAGGAAAGAAGGCTATCTTGGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAACAAAAGTATGGTGTTGATTTAATTTACAAGCATCAGCCTCTTATAAGAGGACGGGGTGTTTCATACTGCAAGAATCTTTTATCCCCTCGATTTGAACACAGTGAAACACATGAAGCCGAATCTGAAGAGGCTCTTGACAAAACTTATTATGTCTTTCTTCCTCCTGAGCTATGCCTTGTACACCCCCTGCCTGGATCACTTGTTCGTGGGGCCCAAAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTTCTGGCAATTCAACTTAAGAATATGATAAATTATCCAGTCCAGTCTTCCAAGATATTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTCCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGATATTATATCAATATGCATTGAGCAAAGGGCTTCAATCGTATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTCTTTGATGAGGACACCAGAGATGGAGAGTCATCTTTATTTGATCCAGAGGGATTGATTTCAAAGACGGAGAAGATGGATCGCCTTTCTGATGGATTTGAGGATGATGAAATGGAAGATGGTGAGCTTGAGAGCGATTCAAGTTCTTATAGAGTCCTATCCAGCAAGACACTTGCGGACGTTGTAGAAGCTCTGATTGGGGTGTACTATGTTGAAGGTGGGAAGAACGCTGCGAATCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATAAGATGGAGTGTACAAGGAAGCCAAACACTGTTCCTGAGAGCGTTCTTCGGAGTGTTGACTTTGATGCTCTGGAGGGTGCTCTGAATATCAAGTTTAGAGACAAGGGGCTGCTTATAGAAGCAATAACTCATGCATCAAGACCATCCTCTGGAGTATCCTGTTATCAGCGGTTAGAGTTTGTTGGTGATGCTGTCTTGGATCATCTCATTACTAGGCACTTGTTTTTCACTTATACAGATTTACCACCGGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAACTTTGCTCGTGTTGCAGTTAAACGCAATCTTCATGTCCATCTTCGACATGGGTCCAGTGCCCTAGAAAAACAGATTACAGAATTTGTGAAGGAAGTTCAGGAAGAGTTGTCAAAGCCAGGGTTTAACTCCTTTGGCTTGGGAGACTGCAAAGCACCCAAAGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGACGAGATACTTCCGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTGACGCCTGAGACTCTGCCAATGCATCCTGTGCGGGAGCTACAAGAACGATGCCAGCAGCAGGCAGAAGGCTTAGAATATAGAGCCTGTCGAATTGGAAATTTGGCTACTGTGGAAGTATTTATTGATGGCGTGCAAGTCGGGGCTGCTCAAAATCCTCAAAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCATTGAAAGAGAAAGAGCAGGAGGTAGCCAAATCTAAGGAGAAGGATGAAGAAAATGGCAAGAAGAAGTCTGGAAACCAGACATTCACCAGACAAACATTAAACGACATCTGCTTGCGGAGAAATTGGCCTATGCCATTGTACCGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATATGCAGTTCGTGTCAATACGACCGATAGAGGATGGACAGATGAATGTATTGGAGAGCCAATGCCAAGCGTGAAGAAAGCCAGGGATTCTGCTGCTGTTCTTCTCTTAGAACTTCTAAATAAATTATACTCCTAA 5892 0.4358 MGDGSIRVSGKVEDDPVVPRSSTSYWLDAVEDISCDLIHFDDRSIVSEQVDNNLIQDGLVNDFFGGIDSILDSIKNGSGLPVAPETGNGNKDLSLALQAEISDQKDNIVKNGLAGEKHDRTVEVCERSAAESNGYKISNGNEGRALGDSKENGDGDLSREHHVDGEERFGKRARLGSYKNERLYPGRGNYHPKERERGPNRKRPREWDEVYRKEKDSLRRRENLHGCGRRDVRDRDWRDRERGYWERDKSGSHDMVFRLGTWEADRHREGKVTNDTKQESNGKTETKTEEPKERVPEEKARKYQLDVLEQAKQRNTIAFLETGAGKTLIAVLLMKSIHENLQKHNKKMLAVFLVPKVPLVYQQAEVIRERTGYHVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVEEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQETYLNKVVSLLQCQLSEGAASEKNAGASDTECGKAQGGSEPDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARDSEETLRREAIERTDLSHLKDTSRFISVDTRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEQPEGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKAEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDACSNSKVLHLYMYAVMSENIGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDISESQLASFKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKSLDLMNQIDWHLVETVIETDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKPHPTYGIRGAVAQFDIVKASGLVPNRQAMPMQKHNSKTVQGKLMMADTCTNAEDLVGRIVTAAHSGKRFYVDSVRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSETHEAESEEALDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFDPEGLISKTEKMDRLSDGFEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKMECTRKPNTVPESVLRSVDFDALEGALNIKFRDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKRNLHVHLRHGSSALEKQITEFVKEVQEELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEQEVAKSKEKDEENGKKKSGNQTFTRQTLNDICLRRNWPMPLYRCVNEGGPAHAKRFTYAVRVNTTDRGWTDECIGEPMPSVKKARDSAAVLLLELLNKLYS 1963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0397 1963 Pfam Ribonuclease III domain 1435 1582 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 Pfam Ribonuclease III domain 1658 1771 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 Pfam PAZ domain 1256 1398 IPR003100 GO:0005515
Alju11g0397 1963 ProSiteProfiles Ribonuclease III family domain profile. 1623 1771 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 PANTHER DICER-RELATED 1254 1867 - -
Alju11g0397 1963 Gene3D - 1891 1961 - -
Alju11g0397 1963 ProSiteProfiles PAZ domain profile. 1238 1378 IPR003100 GO:0005515
Alju11g0397 1963 FunFam Endoribonuclease dicer-like 1 1618 1792 - -
Alju11g0397 1963 CDD RIBOc 1417 1600 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 MobiDBLite consensus disorder prediction 983 1008 - -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 1860 1883 - -
Alju11g0397 1963 CDD SF2_C_dicer 700 830 - -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 981 1008 - -
Alju11g0397 1963 SUPERFAMILY RNase III domain-like 1394 1600 IPR036389 GO:0004525|GO:0006396
Alju11g0397 1963 SMART DRBM_3 1886 1959 IPR014720 -
Alju11g0397 1963 SMART DRBM_3 1798 1859 IPR014720 -
Alju11g0397 1963 SUPERFAMILY RNase III domain-like 1622 1793 IPR036389 GO:0004525|GO:0006396
Alju11g0397 1963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 833 IPR027417 -
Alju11g0397 1963 FunFam Endoribonuclease dicer-like protein 295 535 - -
Alju11g0397 1963 SMART ultradead3 296 499 IPR014001 -
Alju11g0397 1963 SMART PAZ_2_a_3 1238 1402 IPR003100 GO:0005515
Alju11g0397 1963 Pfam Type III restriction enzyme, res subunit 306 466 IPR006935 GO:0003677|GO:0005524|GO:0016787
Alju11g0397 1963 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 895 990 IPR005034 GO:0016891
Alju11g0397 1963 CDD RIBOc 1639 1794 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 ProSiteProfiles Ribonuclease III family domain profile. 1421 1582 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 Gene3D Ribonuclease III domain 1617 1792 IPR036389 GO:0004525|GO:0006396
Alju11g0397 1963 Gene3D Ribonuclease III domain 1400 1596 IPR036389 GO:0004525|GO:0006396
Alju11g0397 1963 MobiDBLite consensus disorder prediction 147 178 - -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 186 204 - -
Alju11g0397 1963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 484 IPR014001 -
Alju11g0397 1963 Gene3D paz domain 1256 1376 - -
Alju11g0397 1963 Pfam Helicase conserved C-terminal domain 703 820 IPR001650 -
Alju11g0397 1963 ProSitePatterns Ribonuclease III family signature. 1658 1666 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 FunFam Endoribonuclease dicer-like protein 1400 1594 - -
Alju11g0397 1963 Coils Coil 1851 1875 - -
Alju11g0397 1963 FunFam Endoribonuclease Dicer 1 1258 1376 - -
Alju11g0397 1963 SUPERFAMILY dsRNA-binding domain-like 1889 1959 - -
Alju11g0397 1963 Gene3D - 693 858 IPR027417 -
Alju11g0397 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1797 1860 IPR014720 -
Alju11g0397 1963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 867 IPR001650 -
Alju11g0397 1963 Pfam Dicer dimerisation domain 895 983 - -
Alju11g0397 1963 Gene3D - 294 538 IPR027417 -
Alju11g0397 1963 Gene3D Dicer dimerisation domain 890 993 IPR038248 -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 648 679 - -
Alju11g0397 1963 SMART riboneu5 1417 1602 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 SMART riboneu5 1638 1794 IPR000999 GO:0004525|GO:0006396
Alju11g0397 1963 MobiDBLite consensus disorder prediction 268 298 - -
Alju11g0397 1963 CDD DEXHc_dicer 299 498 - -
Alju11g0397 1963 SMART helicmild6 736 822 IPR001650 -
Alju11g0397 1963 FunFam endoribonuclease Dicer homolog 1 1891 1960 - -
Alju11g0397 1963 CDD PAZ_CAF_like 1231 1380 - -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 133 204 - -
Alju11g0397 1963 SUPERFAMILY dsRNA-binding domain-like 1753 1862 - -
Alju11g0397 1963 CDD DSRM_DCL_plant 1891 1952 - -
Alju11g0397 1963 FunFam Endoribonuclease dicer-like 1 694 856 - -
Alju11g0397 1963 SUPERFAMILY PAZ domain 1251 1378 IPR036085 GO:0005515
Alju11g0397 1963 Gene3D - 1795 1873 - -
Alju11g0397 1963 FunFam Endoribonuclease dicer-like 1 890 991 - -
Alju11g0397 1963 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1885 1958 - -
Alju11g0397 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1885 1960 IPR014720 -
Alju11g0397 1963 MobiDBLite consensus disorder prediction 1860 1880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0397 Alju-ChrAlju11 4149130 4159543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0397 719 862 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.05e-06 51.6