Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0385 ATGAATGGCCATATCTGTCGTCTTCTTTTTGGGAGATTTAAAATTTTTGTTTCCAACCCCTCTTTCCAATTCCTGGCACACACATTCTTTTTAAATCTATATAACTGCAAGTATAATTCCTTGGTAGATGATCCAGTTTTCGTTGTTGCCATTCATATCACAACTCATTTTCTTTTCCATCCTGCGAGAGAGTTTTCTGTGGAAGATATTTTCTTCGTTTTTGGCGGTTGTGAGCTAAAGTTGGTTTCATCGAAGCATTGCAGGCGATTTGAGATTCTCTCTCGTTTCCACTCATTTTGTAGCAGACTTTGCTGTCACTTTTCTGATATTTGTTTTTCTTGGACAAGCATCATGAGTATGCTCTTGGAAAAAATGGGTGAAGCGGTTCTGGCTAGCGGTAAAAAGGGGATGGTGGACATAGAAGAGGAGATGAACACGATGAACCAGCTGAAGGATGAGAGCTCCTCAGAAATGGTTAATTGGGACAAGTTTCTTCCTCAGATGGTGCTCAGAGTTCTGCTGGTGGAAGCTGATGATTCTACTCGTCAGATTATCGCAGCCCTTCTCCGCAAACGTAGTTACAGAGGTTGGAAGAGGGATTCTTTATTTGCTTGTTGCTCGGACGTGTGGCTTGTTGCTGCGGTTTCTGATGGATTAAAGGCGTGGGAAACATTGAAGAAGAAAGCTCCTGATATTGATCTCATATTAACTGAAGTGGAGCTGCCGTCAATATCTGGATTTGCACTTCTTACTTTAATCAAGGAGCATGAAATTTGTAGAAACATTCCCGTCATAATGATGTCTTCTCATGATTCTATTAGCATGGCAATGAAATGCATACTAAAAGGTGCAGCTGACTTTCTTATAAAACCTGTTCGGAGGAATGTACTATCCACCTTGTGGCAACATGTGTGGAGAAGGCATCCTAAAAAACTTGAAGCTACTTCAGAATACAATGCTGCTAGCAACCATACAACTGGTTCCGTGGCTTCCACACAGAAAAATAATGAGTGCTGCGAGAAAAGGAGTGAGGCCCAAAGCACTTGTACATCGCCTATTTTGGAAGCTGAGAGTGCATACATGCAAAATATGCAGGATACGTCCCAGCCCAGGAGTCCTTCAAATTTGAGCAACATTGACACAGTGAAGTATGAAGAATCTGCAAAACTTGAAAGGGACTCTGCTAAACACAATAATGAAACTACGAAGAGGTCGATTAGTTATTCATCCGAGGCTGCTAGGTGCAATAGCAATATTAACTTGACAAATTTAAGGCTGGTGCAAGACAATTTTGGTGAAACAGAAAATCAGGATGAATATTTAAGAGCAGAGTTAAATAGAGACAATCCTAATGGTGATACTGAGATTCATGTCTGCAATAATGAATTGGTAGAACCTTCTAGAGGAGCTATTGACTTGATTGCTACATTTGAGAATATTCCAAAGAATGCTGATAAGAATTATAGTCTTGCTGATGGTGGGAAGGACAAGTTTGATTTTGACCCTTTGTTGGAACTTTCCTTAAGAAATTTTTCTGGTAGCTCATGTAAACTAGAACCTGAAGAAAAGCAAACTTTGAACCATTCAGATGCATCTGCCTTTTCTTGGTATAGTAGTAATAAGTTGCCACTGCCCCTTTTTCCAGCATTACCAATGAGTTCTGCCAAAGCATATAGTACTGAGCTGAATTCCCAGAATTATTCTGAAATATCTGGAATTGATACTTCTTATCGGTATGGCAGGGAAAATCATACTTTGGAGAATACAATCCCACTGGTTCTTCACCAGTTTGGACAAGTTGGAGCACAATTGCCAGACAGTCATCCTGGATCCTCTCCTGCTACTGGCATTACTTCTAATCATATGTTTAGTAGATACGAGAATGTTGAGCCTTCTATATTCTACACACAATCCGGTGCACATCTCACGTGGAGTTCAAAATCAGTCAGCCATAAAGAGAATTCTCCCTTTCCCGCAACCACTTCATTCCTGTCAAATGCTGAAAGTCACAACTCAGAACAACATTATCATTGGTCTGATGCCAGCTGTGCTTCTCTTGATAAAAGGAAAAGCTACTTGGATCTTACAATGCATGATTATCCGGGTGCTCATCAGAATAACGGCGTTAGCTTATGCCATGACACTCCAAACCATATTAATGATGGTTCATATGGAAGTATAGGCAGTATAAGAGAAGGAGATCATACTTCAGCTGTGGTAATCGAGAAAACCCTTGAAAGCTTTAGTGACAATGGTTATCATGATTATGATGAATACAGAGGGGCAGATTCTCTGCGTCCCAGCCAAAGGGAAGCTGCTCTAACAAAGTTTCGACTGAAGAGGAAGGACAGGTGCTTTGAGAAAAAGGTCAGGTATCAAAGCCGGAAAAGACTGGCTGAGCAGCGTCCTCGGATAAAAGGGCAGTTTGTGCGTCAAGTGCAAAATGATTGTCCAATTGTTGATTCTGGTGGTGGTTCCTGA 2481 0.4095 MNGHICRLLFGRFKIFVSNPSFQFLAHTFFLNLYNCKYNSLVDDPVFVVAIHITTHFLFHPAREFSVEDIFFVFGGCELKLVSSKHCRRFEILSRFHSFCSRLCCHFSDICFSWTSIMSMLLEKMGEAVLASGKKGMVDIEEEMNTMNQLKDESSSEMVNWDKFLPQMVLRVLLVEADDSTRQIIAALLRKRSYRGWKRDSLFACCSDVWLVAAVSDGLKAWETLKKKAPDIDLILTEVELPSISGFALLTLIKEHEICRNIPVIMMSSHDSISMAMKCILKGAADFLIKPVRRNVLSTLWQHVWRRHPKKLEATSEYNAASNHTTGSVASTQKNNECCEKRSEAQSTCTSPILEAESAYMQNMQDTSQPRSPSNLSNIDTVKYEESAKLERDSAKHNNETTKRSISYSSEAARCNSNINLTNLRLVQDNFGETENQDEYLRAELNRDNPNGDTEIHVCNNELVEPSRGAIDLIATFENIPKNADKNYSLADGGKDKFDFDPLLELSLRNFSGSSCKLEPEEKQTLNHSDASAFSWYSSNKLPLPLFPALPMSSAKAYSTELNSQNYSEISGIDTSYRYGRENHTLENTIPLVLHQFGQVGAQLPDSHPGSSPATGITSNHMFSRYENVEPSIFYTQSGAHLTWSSKSVSHKENSPFPATTSFLSNAESHNSEQHYHWSDASCASLDKRKSYLDLTMHDYPGAHQNNGVSLCHDTPNHINDGSYGSIGSIREGDHTSAVVIEKTLESFSDNGYHDYDEYRGADSLRPSQREAALTKFRLKRKDRCFEKKVRYQSRKRLAEQRPRIKGQFVRQVQNDCPIVDSGGGS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0385 826 Coils Coil 137 157 - -
Alju11g0385 826 Pfam Response regulator receiver domain 212 298 IPR001789 GO:0000160
Alju11g0385 826 SUPERFAMILY CheY-like 167 314 IPR011006 -
Alju11g0385 826 SMART REC_2 170 301 IPR001789 GO:0000160
Alju11g0385 826 Gene3D - 168 421 - -
Alju11g0385 826 ProSiteProfiles CCT domain profile. 770 812 IPR010402 GO:0005515
Alju11g0385 826 PANTHER TWO-COMPONENT RESPONSE REGULATOR 170 436 IPR045279 GO:0009736
Alju11g0385 826 Pfam CCT motif 770 812 IPR010402 GO:0005515
Alju11g0385 826 ProSiteProfiles Response regulatory domain profile. 171 305 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0385 Alju-ChrAlju11 4057548 4062678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0385 769 815 Response Regulator Gene Family AT5G24470 89.362 1.92e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Alju11g0385 Response_reg 3.1e-17 CL0304