Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0379 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTGGTGCTAATAATCCTGCAGGGCATTACAATGACACAACTTTTACAAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGTGAGATCCTTGAGGCTGTTGTTATCACAGACAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCTTCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACTCCTCAACATGGAGCAGGAAGGTTCAGAGCAGGACCTGGACTTGTGGCTACACCTGCATACCATGGCTCCTCCTCTTCTACATTTTTCCATCAGCCCTCTGGCCAATATACATTTCCTTATTCAGCTTATGGGTATTCTGGATATTCACAAGACACCATGTATCCCATGAACTATTATAGTGTGTATGGAGGAGTTCAACAGTTTTTACCATATTACACATCCAGTGGGGCATCTGGGCCACCAGGACTGGTCAATAATATTTACCCTTTCTATGCTCAGACTAGCCACCAGGTTCATAATCAAGGCTTTGGACTTCATCATCAGTATCCTCAAATGCTACAGTTCCCATTTCTTCCTCAGCACTATGCCTCCTCTGGGATCCTCTCTTTTCCTTCTTCAACGCCATCGTCAACTACTACAACAACTACTGCAGCGACAACAATAGCAACAACAACAGCAGCGACAGTTACACCTGGGGCAGGTGCTTCACAATCTTCTTCAGCAACAGCTTCTGAGCAAAAAGCTTCAACTTAG 873 0.4479 MSHPRQFQMVGGGANNPAGHYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGAGRFRAGPGLVATPAYHGSSSSTFFHQPSGQYTFPYSAYGYSGYSQDTMYPMNYYSVYGGVQQFLPYYTSSGASGPPGLVNNIYPFYAQTSHQVHNQGFGLHHQYPQMLQFPFLPQHYASSGILSFPSSTPSSTTTTTTAATTIATTTAATVTPGAGASQSSSATASEQKAST 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0379 290 MobiDBLite consensus disorder prediction 267 290 - -
Alju11g0379 290 CDD RRM_RBM24_RBM38_like 27 102 - -
Alju11g0379 290 PANTHER BOULE-RELATED 18 256 - -
Alju11g0379 290 SMART rrm1_1 28 100 IPR000504 GO:0003723
Alju11g0379 290 SUPERFAMILY RNA-binding domain, RBD 20 126 IPR035979 GO:0003676
Alju11g0379 290 Gene3D - 4 120 IPR012677 -
Alju11g0379 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Alju11g0379 290 FunFam RNA-binding protein 24-B isoform X1 14 120 - -
Alju11g0379 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0379 Alju-ChrAlju11 3971341 3973283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0379 23 103 C2H2 Transcription Factor Family AT2G19380 44.444 2.96e-16 77.0