Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0376 ATGCAGGAGAACATGAGCATCTCAGTGAATGGACAATCCCAGGTGCCTCCTGGTTTTCGTTTCCATCCCACCGAAGAGGAGCTTTTGCAGTACTACCTCAGGAAGAAGGTCTGCTTCGAGAAGATCGACCTCGACGTCATTCGCGATGTCGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGAAGTGCAAGATCGGAACCACCCCACAGAACGATTGGTACTTCTTCAGCCATAAAGACAAGAAGTATCCGACCGGAACCCGAACGAACCGGGCCACGGCGGCCGGATTCTGGAAGGCGACGGGGCGGGACAAGGTGATATACGGCAGCGGAAAGAGGATTGGGATGAGGAAGACTCTGGTTTTCTACAAAGGACGTGCCCCTCACGGCCAAAAGTCTGATTGGATCATGCATGAGTATAGGCTTGAAGATAACAACACCCCCAACACCGAGACCAGCATTGTGACGAATGTAATAGGAGATGGAGCACAGGAAGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTCAAAACCCTAGAGAGCCCCTTGGATTCATCCATTACAGAGGAAACAATCAGAAGCAGCCACCACCACCACCACGAATCCTCCATGTTCGACGTCGACGACGACGAGGAGGGAGCTCTGGAGCAAATTCTCGAGCAAATGGGAAGAAGCTGTTGCAAAGAAGAACAAGAACAACAAAACGACCCCACCTCCAACAACAACAACAGCCGAAGAATCACCAGACCGTTTGACGACACTGTCATGAACAACAACAGCCTTAACAATGGCTACTCCCACCACGACAGGTTCTTGAAGCTTCCTCGCTTGGAAAGCCCAAAATCTAATAACAACTACGGGTACCACCCTATTATCGAAGGGGCATATGGCGGCTGCGGTGGCGAAACCAGCTTTGTTCATCATCAAACGGAATCAGCTAGTTCGTCTGTTAACGGTGGTCTAATCACGAACTGGGCGGCGTTGGATCGGCTGGTAGCTTCACAGCTTAATGGCGGCCAAACGACGGAGACTTCTCGGAGCCCACCTTACTTCAACACCACCGGCGCCGGAGACCCCACCACCATGGGGTATGGGTTGAGCGAGCATGATCTGCAACTTCCGACCCTACGATCTTCGTTGTCACTTTCATCAATAATATCATCATCAGGCAACAATAATACAACTGGAACTAATTACGATTACACCACCAGCGAGATTGACCTCTGGAACTTTGCCCGATCCGCATCATCCTTAGTCTCAGGCTCCGAACCACTCTGCCACGTGTCCAACACATCATCAGTGTAG 1320 0.5091 MQENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCFEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGSGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNNTPNTETSIVTNVIGDGAQEEGWVVCRIFKKKNHLKTLESPLDSSITEETIRSSHHHHHESSMFDVDDDEEGALEQILEQMGRSCCKEEQEQQNDPTSNNNNSRRITRPFDDTVMNNNSLNNGYSHHDRFLKLPRLESPKSNNNYGYHPIIEGAYGGCGGETSFVHHQTESASSSVNGGLITNWAALDRLVASQLNGGQTTETSRSPPYFNTTGAGDPTTMGYGLSEHDLQLPTLRSSLSLSSIISSSGNNNTTGTNYDYTTSEIDLWNFARSASSLVSGSEPLCHVSNTSSV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0376 439 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Alju11g0376 439 SUPERFAMILY NAC domain 9 177 IPR036093 GO:0003677|GO:0006355
Alju11g0376 439 MobiDBLite consensus disorder prediction 186 212 - -
Alju11g0376 439 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 244 - -
Alju11g0376 439 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
Alju11g0376 439 MobiDBLite consensus disorder prediction 237 258 - -
Alju11g0376 439 MobiDBLite consensus disorder prediction 195 211 - -
Alju11g0376 439 MobiDBLite consensus disorder prediction 230 258 - -
Alju11g0376 439 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Alju11g0376 439 FunFam NAC domain-containing protein 24 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0376 Alju-ChrAlju11 3911808 3913412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0376 1 437 NAC Transcription Factor Family AT2G46770 52.018 7.89e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju11g0376 NAM 1.5e-35 No_clan