Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0359 ATGGATGATTTGATCATCCCTCCTCCTCCTCCTTCCTTTCTTCTCTGTCTGCCCCGAGATTCCCAACCCTCCCTCCAGCAAAAGCTCCAAATCCTCCTCCACAGTCAGCCTGATTGGTGGGTCTACGCCATTTTCTGGCAGATTTCCAACGACGACGTTCATGGCAATCTCCTCCTCTCTTGGGGCGAAGGCCATTTCAATGGCACCAAGGACACCTCCCCTCGTCTCTCCAGCTCCACTCCCACCACCGCCACACCCCATTACTCAGACAGAACCAGTTTCATGAACAACATTCACTCTCTCATCAACGATAATTCCCACAATAGCTCCAATATTTGCAGCGACCTCCACGATACCGAGTGGTTCTACGTCATGTCCTTGACTCGTACCTTCTCTGTTGCCTCCTCTGTTTCTCTCCCCAGTAAAGCCTTCACCTCTGGTTCTCTCCTCTGGCTCAACAGTAGTGACCACGACCTTCAATTTTGCAACTGTGAGAGAACCAAGGAGGCTTACTTACATGGAATAGAGACTCTGATCTGCATACCCACCAATCATGGAGTCATCGAGATGGGCTCCTCTGATCTCATTCCGGAGAACTGGGCTATAGCGCAGCAGGTCAAAGCTTTGTTCGGGTCTGACCTCATCGCCAAGCAACCGGCCAGCGACAACCTGATTCAGTTCTTCGACGATCAGAACATTTCCTTCGCCGATATTGGAATTATCTCCGGCGTGCAAGAAGAAGACTACAATTCCCACGTGCCCGACGGCAATAACAGAACGAGGAATAATAACAGCAAGAGGAAGGCCGAACAGAGAAATAAGGCAAATTCCGGGTTCAAGTTCGGCTACGCGGATTCGGAGCATTCCGATTCGGACTGTAATCCTTCGGTAGAGAATAAAACCCCAAAGAAGAGAGGGAGAAAACCCGGTCTGGGCCGGGAAACGCCGATTAACCACGTGGAGGCAGAGCGGCAGCGACGGGAGAAGCTAAACCACCGATTCTACGCGCTACGCGCGGTGGTTCCGAATGTATCGAGAATGGACAAGGCTTCTTTGTTATCAGACGCCGTGGATTACATCAACGAGCTGAGATCCAAGATCGAGGATCTAGAATCGCAGATTCAGAAAGAGACGACCAACAACAATAACAGAGATAAGAAAGTGAAAACGGAAATGGCGGACACCAGCACGGCGGACAACCAGAGCGCGACGACTTCGACGGTGGAACAAACGACAGCGGCAGCGACGTCGTCGGGAGGGGGAAGGGCGACGGGGGTGGGGGTGGAGGTGGAGGTGAGGATGATGGGACCGGAGGCAATGGTGAGGGTCCAATCGAAGAACGCGAACCACCCGGGAGCGAGACTAATGGCGGTGCTGAGAGATTTGGAGCTAGGGGTTCACCATGCGAGCATGTCGTGCGTGAATGAGTTCATGCTTCAAGACGTGGTGGTGAAGATTCCAGAAGATCTCAGAAACGAAGAAAATCTCAAATCTGCCATTCTCACTCGTTTGGCTCCCTAG 1521 0.5227 MDDLIIPPPPPSFLLCLPRDSQPSLQQKLQILLHSQPDWWVYAIFWQISNDDVHGNLLLSWGEGHFNGTKDTSPRLSSSTPTTATPHYSDRTSFMNNIHSLINDNSHNSSNICSDLHDTEWFYVMSLTRTFSVASSVSLPSKAFTSGSLLWLNSSDHDLQFCNCERTKEAYLHGIETLICIPTNHGVIEMGSSDLIPENWAIAQQVKALFGSDLIAKQPASDNLIQFFDDQNISFADIGIISGVQEEDYNSHVPDGNNRTRNNNSKRKAEQRNKANSGFKFGYADSEHSDSDCNPSVENKTPKKRGRKPGLGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELRSKIEDLESQIQKETTNNNNRDKKVKTEMADTSTADNQSATTSTVEQTTAAATSSGGGRATGVGVEVEVRMMGPEAMVRVQSKNANHPGARLMAVLRDLELGVHHASMSCVNEFMLQDVVVKIPEDLRNEENLKSAILTRLAP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0359 506 MobiDBLite consensus disorder prediction 285 325 - -
Alju11g0359 506 CDD bHLH_AtAIB_like 312 376 - -
Alju11g0359 506 Gene3D - 312 381 IPR036638 GO:0046983
Alju11g0359 506 MobiDBLite consensus disorder prediction 248 325 - -
Alju11g0359 506 Coils Coil 353 387 - -
Alju11g0359 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Alju11g0359 506 MobiDBLite consensus disorder prediction 394 419 - -
Alju11g0359 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 210 IPR025610 -
Alju11g0359 506 PANTHER MYC 21 503 IPR045084 GO:0003700|GO:0006355
Alju11g0359 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 375 IPR036638 GO:0046983
Alju11g0359 506 SMART finulus 320 369 IPR011598 GO:0046983
Alju11g0359 506 MobiDBLite consensus disorder prediction 374 425 - -
Alju11g0359 506 Pfam Helix-loop-helix DNA-binding domain 318 363 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0359 Alju-ChrAlju11 3609765 3611285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0359 5 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 33.533 4.89e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju11g0359 bHLH-MYC_N 6.8e-47 CL0161