Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0349 ATGTCAGCCCATTATAGTGAATTCTCTCATTCTTCAGCAGCAGAAACATACAACAGCACCACACCAACTTCTTCTTCATCATCATCACCAACAAGAACTGGGAGTATCAGGAAGAAGAAGAATAGCAGCAGCAAGAAAAGGTTCAGTGATGATCAAATCAAGTTATTAGAGTCCATTTTTGAGACAGAGTCCAAGCTTGACCATACAAAAAAATTGCAGCTTGCTTCTGAACTTGGCTTGCAGCCTCGCCAGGTAGCCATATGGTTCCAGAACAGACGAGCTCGATCCAAATCCAAGCATATCCAACGTTCCTACAATCTACTCCAAGCAAATTATGATGCTTTGGCTTCCAAATTTGAAGCTCTCAAGAAGGAGAATCATGCATTACTGCAAGAGTTGCAGAAGCTGAAAGATTTGGAAGATCAGAACTTTTGTTGTAAGAAAGTGAGAGATGAGAATTTGATGAACAGAGAGTGTGGTGAAGCAGAGGTGAAGCAGAGTAGTTCATCAATGGAAAGATCGGAAAAGATACTTGAGGTTCTTTCAGATGATGATAGGAGCTTAAGGAAAGAATATTTTGGGCTTGAAGAAGAAGAAGAACCTACGATTCTGAACTCACAAGAAGTTTGGAGAAATCTTGAATCTACTGATGAACTCTTAGCCCAGTCTGATGACCGTGCTTATCAATGGTGGGACTTTTGGTCCTGA 708 0.4096 MSAHYSEFSHSSAAETYNSTTPTSSSSSSPTRTGSIRKKKNSSSKKRFSDDQIKLLESIFETESKLDHTKKLQLASELGLQPRQVAIWFQNRRARSKSKHIQRSYNLLQANYDALASKFEALKKENHALLQELQKLKDLEDQNFCCKKVRDENLMNRECGEAEVKQSSSSMERSEKILEVLSDDDRSLRKEYFGLEEEEEPTILNSQEVWRNLESTDELLAQSDDRAYQWWDFWS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0349 235 MobiDBLite consensus disorder prediction 1 37 - -
Alju11g0349 235 Gene3D - 14 98 - -
Alju11g0349 235 Coils Coil 105 142 - -
Alju11g0349 235 MobiDBLite consensus disorder prediction 1 49 - -
Alju11g0349 235 Pfam Homeodomain 44 97 IPR001356 GO:0003677
Alju11g0349 235 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Alju11g0349 235 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Alju11g0349 235 SUPERFAMILY Homeodomain-like 19 99 IPR009057 -
Alju11g0349 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 186 IPR045224 GO:0003700
Alju11g0349 235 CDD homeodomain 50 100 IPR001356 GO:0003677
Alju11g0349 235 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Alju11g0349 235 SMART HOX_1 41 103 IPR001356 GO:0003677
Alju11g0349 235 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Alju11g0349 235 Pfam Homeobox associated leucine zipper 99 139 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0349 Alju-ChrAlju11 3450370 3451188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0349 41 235 Homeobox Transcription Factor Family AT2G46680 42.678 8.70e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju11g0349 Homeodomain 2.7e-17 CL0123