Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0334 ATGTGCTCTACGTTTAGTGTTTACTTACAGTTGAATGAAGTTCGATGGGAGAAAGAACGATCATCATCCCGTCGTCGCGCTGGGATCTCTATAATCCGGAGCTTTACACGAAGGGAAACAAATTCGAGATTTTTCAGGCTGCTTGGGGGAATAGTTGCGAAGATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAACGCTTGTTCGCTAAGTATGGGAGGATAGAACGCGTTGACATGAAATCGGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCATTAGACAATTTTCCATTTGGTCATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGCCGTCATCGAGATGGGTCCAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGATCCAATTCGCACTAGAATTCGTGATATAGAAAGGCACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAATCACAAGAAGATGCCACTAAAGCTCTTGAGTGCACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATACTTTGACAGCCCCAGAAGAGGTGGGGGTTATGGAAGATCACCCAGTCCAGTTCCTCGGAGGCGACCTAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTACAATGGACCAGCGTATGACAGACGTAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCCGATTATGGCAGGGCGAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCAGAAGGTCCAGGACTTGA 918 0.476 MCSTFSVYLQLNEVRWEKERSSSRRRAGISIIRSFTRRETNSRFFRLLGGIVAKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGHDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQFESQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYFDSPRRGGGYGRSPSPVPRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRARSPEYGRYRSRSPIRRSRT 305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0334 305 FunFam Serine/arginine-rich splicing factor RS31 55 138 - -
Alju11g0334 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 216 IPR000504 GO:0003723
Alju11g0334 305 SMART rrm1_1 57 124 IPR000504 GO:0003723
Alju11g0334 305 SMART rrm1_1 146 212 IPR000504 GO:0003723
Alju11g0334 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 209 IPR000504 GO:0003723
Alju11g0334 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 115 IPR000504 GO:0003723
Alju11g0334 305 Gene3D - 139 225 IPR012677 -
Alju11g0334 305 Gene3D - 53 138 IPR012677 -
Alju11g0334 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 128 IPR000504 GO:0003723
Alju11g0334 305 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 145 297 - -
Alju11g0334 305 FunFam Serine/arginine-rich splicing factor RS31 139 227 - -
Alju11g0334 305 SUPERFAMILY RNA-binding domain, RBD 56 220 IPR035979 GO:0003676
Alju11g0334 305 CDD RRM2_AtRSp31_like 146 215 - -
Alju11g0334 305 MobiDBLite consensus disorder prediction 264 297 - -
Alju11g0334 305 MobiDBLite consensus disorder prediction 221 305 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju11g0334 Alju-ChrAlju11 3315202 3320742 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0334 54 284 Eukaryotic Initiation Factors Gene Family AT4G34110 27.444 1.67e-09 56.6