Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0317 ATGGCACATCTGGGGTGTAATCTTAAAGGCCCGACGAGTTCTCCGGCGGATACAGGTTTGGAAGATGACGATCTGTATACAGAGTTATGGAAATTATGTGCTGGGCCTCTGGTGGATGTTCCTCATGCTGGGGAGAGAGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAAGAATTGAACCAACAGATTCCCCATTTCAACATTTCATCTAAGATTCTATGCCGTGTTATGCACATTCAGTTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGTATTACCTTACTTCCAGAATCAGATCAAACAGAGCCTACCAGCTCTGATCCATCTCCACCGGAGACTCAGGCGCAGGCTTTTCATTCATTTTGCAAAATACTAACAGCATCTGATACTAGCACGCATGGAGGTTTTTCAGTTCTTCGGAAGCATGCTAATGAGTGCTTGCCACAATTGGACATGACCCAAGCAACCCCTACTCAGGAGTTAGCAGCAAAGGATCTTCATGGGTTTGAATGGAAATTTAAGCATATATTCAGAGGTCAACCAAGAAGACACTTGCTTACAACCGGCTGGAGTACATTTGTCACTTCCAAAAGACTGGTAGCCGGAGATGCATTCGTGTTTTTGCGGGGAGAGAATGGAGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACGGCTTCCCATGCCGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACTAGACAGTATATTATTGGTTTAAACAAATATCTGGCGGCAATCAACAATAAGTTCGCGGTTGGCATGCGCTACAAGATGAGATTTGAGGGAGATGATTCACCTGAGAGAAGGTTTTCGGGAACTATTGTTGGTGTTGGTGATTTATCTACAGATTGGCCAGACTCAAAGTGGCGGTCATTGAAGGTACAATGGGATGAGCCTGCAACAATCCCAAGGCCAGAGAGGGTTTCTCCCTGGGAGATAGAACCTTTTGTTGCTTCTGCGCCTATCAATCTCACTCAACCAGCCGTAAAGAGCAAAAGATCTCGGCCTGCTGATGTTCCATCTTCTGAAATGGTTTCCAATTCAGCTGCTCCAGCTTTCTGGTATCACGGGTCATCCCAGTCCCATGAACTTGCACAATTAGGCGGCGCAACAGAAACCCAAAGTAATGAAAACCAGGTTTTATGGAATGCAAGGCAGAACAACATAAATGGCAATGCTATGAACAACCATAGCTCCTGCAACTCTAGAGTCCGGGTCGAAGGGCCATGGCCTTCATCACATTTGAACATCTCTTCAAACTGTTTTCCTGACCCCAAAAACAACAAGGCTGTTGCAGTTCAGTCTTCTATTTCTGGTTATCCTCCTCCTGGCTCTTCTTGGCCAAATGATGCTTCAGCTTATGATCAAGTTGAGAATGCGAAAAAATGTGAGAATCCCGTGGGGTGCCGGCTATTTGGTGTTAATTTGAGTAACAACTCTAACAATATTGCTCCTCCAGAGAAAGAATCAAGAGGCTGCACTGCTAGTCTGAGTGGTTCCAAAGAATCTGTTCCTGTTGTTGCATGTGAAACTAAGACAAGTCAGAATCCCAATTGTTCAGTGTCCAAAAAGGAGCAGAAGCAAGAAATGTCCAATGCTTCACCAAATAATGAGAGGCAGAGCAAGCAGGCATCTTTACCATCCACTAGGACTCGCACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCCGTTGACTTGACTACGTTGGATGGTTACGAAAGTTTGATTGAAGAGCTTGAAAAGTTGTTCAACATTAAAGGAGAGCTTCGTACGCAGAACAAATGGGCGGTTACTTTCACAGATGATGAGAACGACATGATGCTCGTGGGCGATGATCCGTGGCCGGAGTTTTGTAAAATGGTGAAAAGGATTATAATATATTCAAGCGAGGAAGTGAAGAAGATGAATGCAGTATGCCCAGTTCCTGCATCTTCATCAGAGGATGATGAAACTCTGATCACAGGGAATTCACAGAATAAGGTTGAAAGTCAGTAA 2127 0.4509 MAHLGCNLKGPTSSPADTGLEDDDLYTELWKLCAGPLVDVPHAGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPSPPETQAQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKYLAAINNKFAVGMRYKMRFEGDDSPERRFSGTIVGVGDLSTDWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAPINLTQPAVKSKRSRPADVPSSEMVSNSAAPAFWYHGSSQSHELAQLGGATETQSNENQVLWNARQNNINGNAMNNHSSCNSRVRVEGPWPSSHLNISSNCFPDPKNNKAVAVQSSISGYPPPGSSWPNDASAYDQVENAKKCENPVGCRLFGVNLSNNSNNIAPPEKESRGCTASLSGSKESVPVVACETKTSQNPNCSVSKKEQKQEMSNASPNNERQSKQASLPSTRTRTKVQMQGVAVGRAVDLTTLDGYESLIEELEKLFNIKGELRTQNKWAVTFTDDENDMMLVGDDPWPEFCKMVKRIIIYSSEEVKKMNAVCPVPASSSEDDETLITGNSQNKVESQ 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0317 708 Coils Coil 616 636 - -
Alju11g0317 708 MobiDBLite consensus disorder prediction 553 597 - -
Alju11g0317 708 MobiDBLite consensus disorder prediction 686 708 - -
Alju11g0317 708 MobiDBLite consensus disorder prediction 520 539 - -
Alju11g0317 708 Pfam AUX/IAA family 569 675 IPR033389 -
Alju11g0317 708 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Alju11g0317 708 MobiDBLite consensus disorder prediction 1 20 - -
Alju11g0317 708 SMART B3_2 130 232 IPR003340 GO:0003677
Alju11g0317 708 Gene3D - 588 680 - -
Alju11g0317 708 MobiDBLite consensus disorder prediction 691 708 - -
Alju11g0317 708 FunFam Auxin response factor 291 362 - -
Alju11g0317 708 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Alju11g0317 708 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju11g0317 708 FunFam Auxin response factor 587 680 - -
Alju11g0317 708 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Alju11g0317 708 ProSiteProfiles PB1 domain profile. 592 673 IPR000270 GO:0005515
Alju11g0317 708 CDD B3_DNA 128 230 IPR003340 GO:0003677
Alju11g0317 708 FunFam Auxin response factor 128 232 - -
Alju11g0317 708 SUPERFAMILY CAD & PB1 domains 587 668 - -
Alju11g0317 708 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju11g0317 708 Gene3D - 291 362 - -
Alju11g0317 708 Gene3D - 127 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0317 Alju-ChrAlju11 3169377 3173753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0317 25 679 B3 DNA Binding Superfamily AT4G23980 57.663 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju11g0317 AUX_IAA 2.9e-07 CL0072