Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0311 ATGTGGATTGAGGTAGGTCTTGGAGTCGCAGGAGGTATGGTGTGGAACGAAGACGAACGAGACATGGTGGCGGCGGTTCTGGGCGCTCGAGCTTTCGATTACTTGGTGAACCACTCTGTTTCGAATGAGAATCTGTTAATGGCCGTTGTCACTGACGGGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGTGTCCAAACGTCTCCAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGCTGTTGCAGAGAACCAGATGAAGGCAAAGAAGAAGAAAGAGGAATCCTCAGCCTTCGCATGGAGGATGAAGTTCAACAAAGGATGAGGAAGAGAGTATTGCAGAAGCTTCACACAAGCTTCGGTGGTTCTGAAGAAGACAATTACGTTTATGGATTAGACCGAGTCACTGATACTGAGTTGTTCTTTCTCGCTTCTATGTATTTCTCTTTCCCTCGTGGCCATGGAGGTCCAGGTAAGTGTCTCGCGTCTGGTAAACATTCATGGCTCACAGATGCACATAAATCTTCAGTTGATTATTGTGTGAGATCGTTTCTGGTTAAATCGGCGGGAATTCAGACTATAGTTTTGATCCCTACTGATATGGGTGTGGTGGAGCTGGGTTCTACGAAGATGGTGAAGGAGAATTTAGAATTGTTGCAGGCAATCAAATCGGAATTTTCCATTGAATCTGCATTTCCAAGGCCAAAATCGTCAATTCCAGCACCACCTCCATCTCCTCCGGTTCCGGTGACGGTGGAGAAAAGAGATGAGCTTAGTGTTTTTCCGGTTTTAACAGTTTCTGATAAAGTTGAAGTAGTTCCGAAGATTTTCGGGCAGGATTTGAACCAGACGAAGAACCCGAACCCGGTTCGAACCGGCCAATTTAGAGAGAAACTTGCTATTAGGAAAATGGAGGATAGGCCATGGTTAGGAGGTCATCACTCCAATGGCGTTCATCCTCATCCTCATCCTCGTAATGGTGTTCATCCTTCAAGCTGGACGACAGCTAACAACAATGGCGTAAGGCAAGTCAGTCCTGTTGAAACTTATGTTCCTAGATCGTCGCAGACGAACAATGTACCGGTTCTGGACCTTGTTAATGGTGTTAACAACAACTATAATCATCAGCCACAAAGGAAAGCGCCGACAATGCAGATTGATTTCTCAGGAGCTACTAATTCCAGGTCCGTTGTCACCGCCGTGAGACCAAATGGCGGCGGTGCCGGTGAATCAGAGCAATCTGATGCTGATGCTGCTGCTTCATTCAGGGAGGAGCTACTGCCGGCCGCGGCAGGGGACGAGAGGCGGCCGAGGAAGCGGGGAAGAAAGCCGGCGAACGGCAGGGAAGAACCTCTGAACCACGTGGAAGCTGAGAGGCAGAGACGTGAGAAGCTGAACCAACGGTTCTATGCATTAAGAGCTGTGGTGCCTAATATATCCAAGATGGACAAAGCCTCTTTACTGGGAGACGCCATTGCTTACATCAATGAGCTTCAGGCAAAACTGAAAGCGATGGAATATGAGAAAGAGATCAGACTCGGAGGAAGCAGCAATTCTTCGCGGGATCCATCAATAGAACCCAACTATAACTCTGGTCAGTCACAGCAATCTCCTCCTCAAGTGGAAGTCCAAGCTCGTCATGACGAGGTCATCGTGAGTGTGATCTCTCCGATCAACTCTCACCCAGTTTCACCGGTGATCAAAGCTTTAATAGAAGCACAAGTTAGCGTTGTTGATTCAAAACTTGCCACTGCAAATGAAGCTGTGTTTCACACATTTGTGATCAAGCAGCCTCAAGGGCCTGATCAGCAGCTGACAAAGGACAAGTTGATGGCTGCATTTTCCCGCCAATCCAATTCATTGACTGGCCAATTAACATAG 1929 0.478 MWIEVGLGVAGGMVWNEDERDMVAAVLGARAFDYLVNHSVSNENLLMAVVTDGNLQKKLSDLVECPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPDEGKEEERGILSLRMEDEVQQRMRKRVLQKLHTSFGGSEEDNYVYGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHSWLTDAHKSSVDYCVRSFLVKSAGIQTIVLIPTDMGVVELGSTKMVKENLELLQAIKSEFSIESAFPRPKSSIPAPPPSPPVPVTVEKRDELSVFPVLTVSDKVEVVPKIFGQDLNQTKNPNPVRTGQFREKLAIRKMEDRPWLGGHHSNGVHPHPHPRNGVHPSSWTTANNNGVRQVSPVETYVPRSSQTNNVPVLDLVNGVNNNYNHQPQRKAPTMQIDFSGATNSRSVVTAVRPNGGGAGESEQSDADAAASFREELLPAAAGDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMEYEKEIRLGGSSNSSRDPSIEPNYNSGQSQQSPPQVEVQARHDEVIVSVISPINSHPVSPVIKALIEAQVSVVDSKLATANEAVFHTFVIKQPQGPDQQLTKDKLMAAFSRQSNSLTGQLT 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0311 642 MobiDBLite consensus disorder prediction 529 558 - -
Alju11g0311 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 528 IPR036638 GO:0046983
Alju11g0311 642 Gene3D - 459 528 IPR036638 GO:0046983
Alju11g0311 642 MobiDBLite consensus disorder prediction 529 559 - -
Alju11g0311 642 CDD bHLH_AtAIB_like 462 540 - -
Alju11g0311 642 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 242 IPR025610 -
Alju11g0311 642 FunFam Transcription factor bHLH13 458 529 - -
Alju11g0311 642 SMART finulus 471 520 IPR011598 GO:0046983
Alju11g0311 642 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Alju11g0311 642 PANTHER MYC 41 629 IPR045084 GO:0003700|GO:0006355
Alju11g0311 642 MobiDBLite consensus disorder prediction 327 354 - -
Alju11g0311 642 MobiDBLite consensus disorder prediction 444 476 - -
Alju11g0311 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Alju11g0311 642 MobiDBLite consensus disorder prediction 415 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0311 Alju-ChrAlju11 3101645 3103722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0311 11 637 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.848 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju11g0311 bHLH-MYC_N 3.5e-56 CL0161