Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0309 ATGGTCGATGACGGGGAAGGTTCGGCGTTTCATATCTTCCGTCAACCGCTCCGTTTTGGTCCCATGGACAAGTCGGCCGTTCGGCGGTGCAGGCGAAGCGCCGGTTTGTGGCGGTGCTGCGAGGTGCCACCGCAGGGAAAATCGTACTGCGAGAAGCACCTGGCGCAAATGAAGAGTTACGAGCAGAAACGCAGAATCAAGGAGCAAGAAGGAGGGGAGCTGGACTGTGATTCGAGCTCCAGGAAAAGGAAGAATGGTGTGGTCTGCAGGGAATCGGAGGGTGAAGTGTCAGATTCGGAGTCGAAACGGAAATCGGTCCGAGTTCGAGAGTTGAAGCTCGCGGCTAGTTCGGAGAAGAAGAAAATGAGTGATGGTAGAAGAGTAAATAACACCGTGAAGGCAGTGCTGAAGGAAAATTCCGGTGAAGATCGGGGACGGAATTGTGCCTCGCTGGAGAAACCATCCATGGTTACGGAGTTGCAAAGGAAAACAAAGGAGGGTGGATGTTTGACGTGTCATCAGTGCAAGCGGAATGACAAGAATGGTGTTGTCTTCTGCTTAAAGTGTGGCAGAAAACGCTACTGTTATGATTGCCTCAAGAAGTGGTATCCAGGAAAAACACAAGAGGAAGTTGAGAATAAATGCCCATATTGTTGTGGCAATTGCAATTGCAAAGCCTGCCTGCGAGTGATTCCTGATCTGAGGCAACCAGAAATGGATGACAGTGCCAAAATAGAACGACTGCTGTATTTACTACACAATGCTTTGCCCGTTCTTAGGCATATTTATAAGGAGCAGAGCTCTGAGCTAGACACTGAAGCAAAAATAAGAGGTAATCAACTGCAAGAAATTAACATAACAAGAACAAAGTTAGATGGAAGTGAGCGTCTGTACTGTGACAATTGCAATACATCTATTGCTGGATTTTACCGAAGCTGTCCCAACCCCTGTTGCTCTTACGACTTATGTCTTGCCTGCTGTCAAGAACTTAGAAATGGTTGCCAACCTGGCGGCATGGAAGCTGAAGCATTGAATGAACAGATTGTAGAGAAAGATGGGAACCAAGATTCAACAAGGACTTGTAGTAAGACTCATACAGATAGACATGGCTGGGAAAGCCAACTCTTACCTAATGTTTTTGATATTCAAACTGATGGAGCCTGTCCATTTCCTGAATGGCGAGCTAATAGTGATGGTAATATTCCATGTCCTCCAAAACAGCATGGAGGTTGTGGCACTGCATTGCTAGAACTGAGACGTTCTTTTAAAGCTGATTGGGTGGTGATGCTGTTAAAGAATGCGGAGGGCCTCACAAGAGACTACAGACCCCTGGACTTTGATGTTTTTGTGAAGTGCTCTTTATGCTGGCCAAATTTGGTTGACGGGAAATTCAATTATGAAGTCAGGCAGGCAGCATCTAGGGATGATGGTCAAGATAATTTTTTATACAGCCCGAATGCCCTTCACATGTCTGATGATGAAGTTGAGCATTTCCAGAGGCACTGGATAAGGGGAGAACCTGTGATTGTGAGAAATGTTCTGGACATGACGTCTGGCCTTAGTTGGGATCCAATGGTTATGTGGAGGGCTTTTAGAGAAACAGGTTCTGGAACAAAGCATAAAGAGGAAACACGTAGTGTAAAGGCCGTCGATTGCTTTGATTGGTGTGAGGTGGAAATCAATATTCACCAATTTTTTGCAGGCTACCTAGAAGGTCGAATGCATAAGAATAGGTGGCCAGAAATTCTGAAATTGAAAGATTGGCCTTCATCAACCTTGTTTGAAGAGCGTTTGCCCAGGCATGGGACTGAATTTCTTACAGCTCTACCCTACAGGGACTACACTGATCCAAAATCAGGTCTTTTGAATCTTGCCAGTAGACTTCCTGATGGCTCACTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGGTTTCTTGACGAGCTTGGTAGAGGTGATTCGGTGACAAAACTCCACTGTGATGTGTCTGATGCGGTTAATGTACTGACCCACACAACCAAGGTGAATATGGGTGCTTGGCAACTAAAAAGCATAAAAGAATTGCAGGAGAAATATTGGAAAGAAGACATGCAGGAACTATACGGTGAAGAACATACTGATGATATTGATGGAAGACCCAAATCAAATGGTAGAAAGACTGAGGATGGAGTCAACAGTTTTTCTTCTGGCCGCCAAATAGATGAACATATTTCATCAGCAATAGAAGACTCAACCGTGAAGTTAGAAAGTTCATCAGCATCGGGGGACTCAACCGTGAAGTTAGAAACAACTGACACACAACAATTTGGTGAGGGCAGAAGCTGCTCTGCCTCCGGCAGAAATGTTGTGGCAAGAAGTTGCTCTGCAGAAGATGATGTTAGTATAATATCTGCCAAAGTTTCAGATTACGCCAAGACTTGCGGACAGAAACATGAACTTACTCAATCTGCAAGTAACTTAACCTCTAGTTGTAAGAGCAATGTTAATGACAAAACGTGGACTGACCTTCTTAACAATTCATCTGATGGTCCAGAGTCCCAAAAATCAAAACATGGTCTGGTAAAAGATTCTGTAGAAATCAATCAAGAAGCTGCAGTTGTCCATGGTGGTGCTGTTTGGGATATCTTCCGTCGTCAAGATGTACCAAAACTAATGGAGTATTTAAGGAAGCATAAGAAGGAATTCCGTCATATCGAAAATCATCCTGTAAATTCTGTTACACATCCCATTCATGATCAGACATTTTTCCTTAATGAGAAGCATAAGAAACAATTGAAACGGGAGTTTGGTGTTGAACCCTGGACTTTTGAGCAACATCTTGGTGAAGCTGTTTTCATTCCCGCAGGATGTCCCCATCAAGTTAGAAATAGACAATCTTGTATAAAGGTGGCACTTGATTTTGTTTCCCCTGAAAATGTTGAAGAATGTTTACGACTAACTGAAGAGTTTCGTTTGCTCCCAAAGAAACACAGAGCCAGGGAGGATAAATTAGAGGTTAGAAAGATGACACTTTATGCTGTAAGTTCGGCTGTTAGAGAAATCAAAAGCCTGATGAAGTCTACTGAGTAA 3075 0.438 MVDDGEGSAFHIFRQPLRFGPMDKSAVRRCRRSAGLWRCCEVPPQGKSYCEKHLAQMKSYEQKRRIKEQEGGELDCDSSSRKRKNGVVCRESEGEVSDSESKRKSVRVRELKLAASSEKKKMSDGRRVNNTVKAVLKENSGEDRGRNCASLEKPSMVTELQRKTKEGGCLTCHQCKRNDKNGVVFCLKCGRKRYCYDCLKKWYPGKTQEEVENKCPYCCGNCNCKACLRVIPDLRQPEMDDSAKIERLLYLLHNALPVLRHIYKEQSSELDTEAKIRGNQLQEINITRTKLDGSERLYCDNCNTSIAGFYRSCPNPCCSYDLCLACCQELRNGCQPGGMEAEALNEQIVEKDGNQDSTRTCSKTHTDRHGWESQLLPNVFDIQTDGACPFPEWRANSDGNIPCPPKQHGGCGTALLELRRSFKADWVVMLLKNAEGLTRDYRPLDFDVFVKCSLCWPNLVDGKFNYEVRQAASRDDGQDNFLYSPNALHMSDDEVEHFQRHWIRGEPVIVRNVLDMTSGLSWDPMVMWRAFRETGSGTKHKEETRSVKAVDCFDWCEVEINIHQFFAGYLEGRMHKNRWPEILKLKDWPSSTLFEERLPRHGTEFLTALPYRDYTDPKSGLLNLASRLPDGSLKPDLGPKTYIAYGFLDELGRGDSVTKLHCDVSDAVNVLTHTTKVNMGAWQLKSIKELQEKYWKEDMQELYGEEHTDDIDGRPKSNGRKTEDGVNSFSSGRQIDEHISSAIEDSTVKLESSSASGDSTVKLETTDTQQFGEGRSCSASGRNVVARSCSAEDDVSIISAKVSDYAKTCGQKHELTQSASNLTSSCKSNVNDKTWTDLLNNSSDGPESQKSKHGLVKDSVEINQEAAVVHGGAVWDIFRRQDVPKLMEYLRKHKKEFRHIENHPVNSVTHPIHDQTFFLNEKHKKQLKREFGVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVEECLRLTEEFRLLPKKHRAREDKLEVRKMTLYAVSSAVREIKSLMKSTE 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0309 1024 MobiDBLite consensus disorder prediction 705 721 - -
Alju11g0309 1024 ProSiteProfiles JmjC domain profile. 617 986 IPR003347 -
Alju11g0309 1024 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 58 1021 IPR045109 GO:0032454|GO:0033169
Alju11g0309 1024 FunFam Transcription factor jumonji (JmjC) domain-containing protein 800 995 - -
Alju11g0309 1024 Gene3D Cupin 804 995 - -
Alju11g0309 1024 Gene3D Cupin 481 725 - -
Alju11g0309 1024 ProSiteProfiles Zinc finger RING-type profile. 172 218 IPR001841 -
Alju11g0309 1024 ProSiteProfiles WRC domain profile. 24 68 IPR014977 -
Alju11g0309 1024 CDD cupin_RmlC-like 909 970 - -
Alju11g0309 1024 SUPERFAMILY Clavaminate synthase-like 495 1010 - -
Alju11g0309 1024 SMART cupin_9 598 986 IPR003347 -
Alju11g0309 1024 Pfam JmjC domain, hydroxylase 873 969 IPR003347 -
Alju11g0309 1024 Coils Coil 50 70 - -
Alju11g0309 1024 MobiDBLite consensus disorder prediction 705 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0309 Alju-ChrAlju11 3072094 3081000 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju11g0309 JmjC 5.5e-17 CL0029