Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0289 ATGATAATTAAGCGGACTATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGTTAGAGGAGCAGGACGCCGAGGACTATGGGTGTGCGTCCGTTCCGAAGAAACGGAAGGTTAATGGGTTTCATTCTCCTGGTATGCCGGGCGAGGCTGAAGATTTCAGCAGTGGTTCAGGGTCCTGGTGCAGTGAAGGATCGTACTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTATGCCATTGAATGGTAGAACAGCAATGGAGCAAGGCTCTGAAAGGATTAGGCCTCCATTGTTGCGGTCGTCTCGTGGTCGCTCTCAAATGCTTCCATCGAGGTTCAATGATTCTGTTCTCGGTACATGGAAGAATCGGGGAATCAAAGTGGAGGACGCGGACTCCAGCTTTGAGGATGATAATATTCTAGTTGAAGATAAGGCGGGGGTTAGTGGATTGGGATTTGCTAAACAGGGAAAGGGAAATAACTATGGCTCCAAAAAGTCGAAGTATTATTCATATCCTGACATGGAGGAGGAGGAATCAGGATTCGACGACTCAGGTTTAAACAATTTTGAACACCGGAAGCTTGCAAATTCTTTTAGTACTACTAGAACATCAATTAATGGAAATCGTTCATCAGCAGTTAAAACCGAGAGTTATACGTCTGGTCTAAGTTTTGAGGGTGTGGACCACAAGCTTGATCGAAATGCTGTGAAAAGGAGAGATGTCTATAAACCGGAGGATTTTGCTTTGGGTGACATAGTTTGGGCAAAGTGTGGAAAGAGATATCCAGCTTGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCGAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCCTTCGTGGAGTTCATGGGCAGATTCCAGGGGCAGACTCGGCTGTACAAGTGCAAACCAAGTGACTTTCAGATGGCCCTGGAAGAGGCGCTGTTGGCAGAAGATGGTTTTATGGATTCACCTGTGGGAGCCGAGCAGAGAACAAATGCAGAAGCCCATCCCAATGGGTTTATGGAGGCTACAAGTTCATATGTTGATCCAGAGTATGGCTCTCAAGACCAGGATTTGAGACCTTGTGCCGGCTGTGGTCTGCCTTTGCCCTTCAAAACCCTGAAGAAGATTAAGGATTCCAATTTTTCAGCTCAACTTTATTGCAAATTTTGTGCCAAGTTACGTAAATCAAAACAATATTGTGGCATTTGCAAAAAGATATGGCACCATTCAGATGGTGGCAATTGGGTGTGTTGTGATGGTTGTAATGTTTGGGTTCATGCTGAATGTGCCAAAATATCCAGTAAACTTTTCAAGGATCTGGAACACACAGATTACTATTGTCCAGATTGCAAAACAAATTTAAACTGTAAATTTTCAGCATCACAAACATGCAAGCCAAAAATCAAATCAACAGAAAATAGCCAAAAGCCCGATATACCTGATAAGGTAACAGTGGTGTGCAATGGCATGGAAGCGTATTACATTCCGAAACTTCATCTAGTCATGTGCAAGTGTGGCTCATGTGGGGTGCGAAAGCAGACACTGAGTGAATGGGAACGGCATACGGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCTCTTGAAAAGTGGATTGCAGAAAACAATACACAAGGAGCAGTTTCTATGCAATTAGATCAACAGCAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCAGTTTGTCCAAAGTGGACTACTGAAAGATGTGCCGTTTGTAGATGGGTTGAAGATTGGGATTATAACAAAATTATCATCTGCAACAGGTGCCAAATAGCTGTCCACCAAGAATGCTATGGAGCAAAGAATGTCAAGGATTTTACTTCTTGGGTCTGTAGGGTGTGCGAAACCCCTGATGTTGAGAGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACATGTGCTTGGTTCCGGCCTGAAGTTATATTCTCAAACGATGAGACAATGGAACCTGCATCTGGAATCCTTAAAATTTCTTCAAGTTCCTTTTTGAAGACTTGTATTATCTGTAAACAAAGCCATGGATCCTGTGCAAGTTGTTGCAAATGTGCTACTTATTTTCATGTGATGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTGTATGGAGAAGAATGGAGTTCCGATAACAAAGAAGTTAATATATTGTGCATTTCACAGGCTTCCAACACCAGATTCCGTAATGGTTGTTCATACTCCATTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAAAATCACAAGGGATGTTTCAGGGGCTCGAGGCTGGTATCATTGAAAAACATACAACTTCTTGAATCTTCAGCCTCCGAGACTAATGAATTTGATCCACTATCTGCTGCAAGATGTCGTGTTTATAGAAGGTCTTCCAAGAATGCTGATGAGCCAATAATACATTTACTGAGGGGACCAAGTCGTCATTTATTAAGTTCTATAATTCAATTGAACAGCTATGAGGACTCAGAACATTTTAAAGTATTTACTTCATTCAAGGAACGTCTCCACCATTTGCAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAGTCCGGTATACATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAGGGAGAGATGGTTGCTGAGTACCGTGGTGAACAGGTAAGACGAAGTGTTGCTGATATGAGGGAGACCAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAAGAAATGGTCATTGATGCGACACATGGGGGAAATATAGCGCGCCTGATAAACCACTCTTGCATGCCTAACTGCTATGCAAGGATTATGAGTATGGGTGCCGAGGAGAGCCGGATTGTTCTTATCGCCAAGACCCATGTTTCTGGTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGACGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAGATTTATGAACTAG 3138 0.4324 MIIKRTMKIEMPNLKRCKLEEQDAEDYGCASVPKKRKVNGFHSPGMPGEAEDFSSGSGSWCSEGSYWASEVLSNSNSMPLNGRTAMEQGSERIRPPLLRSSRGRSQMLPSRFNDSVLGTWKNRGIKVEDADSSFEDDNILVEDKAGVSGLGFAKQGKGNNYGSKKSKYYSYPDMEEEESGFDDSGLNNFEHRKLANSFSTTRTSINGNRSSAVKTESYTSGLSFEGVDHKLDRNAVKRRDVYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFVEFMGRFQGQTRLYKCKPSDFQMALEEALLAEDGFMDSPVGAEQRTNAEAHPNGFMEATSSYVDPEYGSQDQDLRPCAGCGLPLPFKTLKKIKDSNFSAQLYCKFCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECAKISSKLFKDLEHTDYYCPDCKTNLNCKFSASQTCKPKIKSTENSQKPDIPDKVTVVCNGMEAYYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWIAENNTQGAVSMQLDQQQVLAFLQEKYEPVCPKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVIFSNDETMEPASGILKISSSSFLKTCIICKQSHGSCASCCKCATYFHVMCASRAGYSMELHCMEKNGVPITKKLIYCAFHRLPTPDSVMVVHTPLGVFSPRTSLQNHKGCFRGSRLVSLKNIQLLESSASETNEFDPLSAARCRVYRRSSKNADEPIIHLLRGPSRHLLSSIIQLNSYEDSEHFKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMRETKYRSEGKDCYLFKISEEMVIDATHGGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTHVSGGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0289 1045 SMART PHD_3 725 781 IPR001965 -
Alju11g0289 1045 SMART PHD_3 614 661 IPR001965 -
Alju11g0289 1045 SMART PHD_3 430 482 IPR001965 -
Alju11g0289 1045 SMART set_7 903 1026 IPR001214 GO:0005515
Alju11g0289 1045 SMART PWWP_4 247 316 IPR000313 -
Alju11g0289 1045 CDD PHD_ATX3_4_5_like 614 660 IPR042011 -
Alju11g0289 1045 ProSiteProfiles SET domain profile. 903 1020 IPR001214 GO:0005515
Alju11g0289 1045 Gene3D - 234 353 - -
Alju11g0289 1045 FunFam Histone-lysine N-methyltransferase 664 783 - -
Alju11g0289 1045 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Alju11g0289 1045 SUPERFAMILY Tudor/PWWP/MBT 240 348 - -
Alju11g0289 1045 SUPERFAMILY FYVE/PHD zinc finger 428 489 IPR011011 -
Alju11g0289 1045 CDD PWWP_AtATX3-like 250 350 - -
Alju11g0289 1045 PANTHER PHD FINGER PROTEINS 12 464 - -
Alju11g0289 1045 SUPERFAMILY FYVE/PHD zinc finger 613 677 IPR011011 -
Alju11g0289 1045 Pfam SET domain 914 1019 IPR001214 GO:0005515
Alju11g0289 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 663 IPR013083 -
Alju11g0289 1045 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1045 IPR025780 -
Alju11g0289 1045 SUPERFAMILY SET domain 894 1041 IPR046341 -
Alju11g0289 1045 Pfam PHD-zinc-finger like domain 668 780 - -
Alju11g0289 1045 ProSiteProfiles Zinc finger PHD-type profile. 428 484 IPR019787 -
Alju11g0289 1045 Pfam PHD-finger 627 661 - -
Alju11g0289 1045 Gene3D SET domain 829 1045 IPR046341 -
Alju11g0289 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 487 IPR013083 -
Alju11g0289 1045 Pfam PHD-finger 430 483 IPR019787 -
Alju11g0289 1045 CDD PHD_TCF19_like 431 481 - -
Alju11g0289 1045 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Alju11g0289 1045 SMART PostSET_3 1029 1045 IPR003616 -
Alju11g0289 1045 ProSiteProfiles Post-SET domain profile. 1029 1045 IPR003616 -
Alju11g0289 1045 FunFam Histone-lysine N-methyltransferase 878 1045 - -
Alju11g0289 1045 ProSiteProfiles Zinc finger PHD-type profile. 612 663 IPR019787 -
Alju11g0289 1045 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 781 IPR034732 -
Alju11g0289 1045 CDD SET_SETD1-like 892 1041 - -
Alju11g0289 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 782 IPR013083 -
Alju11g0289 1045 Pfam PWWP domain 250 345 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0289 Alju-ChrAlju11 2855332 2863110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0289 383 455 EF-hand Containing Proteins AT5G28340 58.904 1.06e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju11g0289 zf-HC5HC2H_2 5.1e-28 CL0390