Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0288 ATGGAGGGCCATATCGCCACCACTAAGGCCTACAATCTCTTCGTGAAGCTCTTAGACGGAAAAACCCTAACCCTAAAATTCCCATCTTCTACTCTTCACGCCAATTTCGTAAAGGATCGCATTTTCGAGGTTACCAGAATCCCCACACAACACCAGCGCCTTGTTACTGGCGTCCAAGACCTTAACCGTAACGAATCTGTAATCTCCTGCTCGCCGGAAGGCGGAGATGTGTTCCCCACCGTCCATCTGCTGCTGCGACTCGCTGGTGGCAAGGGAGGGTTTGGATCGCTTTTGCGTGGTGCAGCCACCAAGGCTGGGCAGAAGAAGACGAACAACTTCGATGCTTGCAGAGATATGAGCGGCCGGAGGTTGAGGCACGTGAACGCGGAGAAGAGATTGGAGGAATGGAAGGCGGAGGAGGCGGAGAGGAAGCTGGAGAAGATGGCGGAAGAGTTTTTGAAGAAGCAGGCGAAGAAGGGCAAGAAGGGTGTGGGCGATGGCGAGGCGCACAAGTATGTGGCAAAATACAGGGAGGAGTCTGAGCGATGCGCTGCTGAGGTTGCCGAGTCGGTGAAGGAAGCTTTGATGTCTATAAAGGGCAAGAGAAAGGTTTCAAATTTTAAAAAAGATGGAGCAGATGCAAAGAAGATGAAGATATGGATGGGAAAGAGGAAATTAAATGAAAGTGATAGTGATGATTCTGATGAGGATGGAAGCGAAGATGAAGCAGAAAATGAGAAATCAACTGTGTTAAATAATGGGAATGACTCAGACTCAAATAAGGCTGAAGGCAGTTCAGGTTCAGTAACTGGTGGGAAACAGGATGGTGAATCTTCTGTGGCAGGCTCAAGTGGAAGTTGCTCTGAAGAAGAGAAAAAGACTGTTCTAGAAGGAAAAATGGACTCCAGCAATTGTCTCAACATTGAATCTCTTCAGAATACTACGGGCAAATCGGTTGAACCTATGACATGTGATAAGATGGGAAATGGTGTCACAAACCCTGTTTTGGAGTCTGCAGCTTTGGGAATTGATGCTGAAGAAGATGGAAAGAAGGACTCTAGTGAAGCTGACGAGCTTGATCCTGCAGTTGCTCAAGCCACAAATCTTATAAGTTCACAGCATGTGGTCGATGCAATCAAATCAAATGCTATTGAAACTGATGCATTGCATGAGGATAAAGCATCATCTCATGAAGAAACTCACTCAAGTGCCAGTGCTCAGGAAATAGATGAGCCCTTGAATTTTGAGGAATTGAATTCAGCTGCAGAACTTGAGGTTCTTGGCCTCGAGAGGTTGAAGTCTGAACTGCAGGAGCGCGGCTTAAAATGTGGAGGCACATTGCAGGAGCGTGCTGCCAGGCTTTTCCTTCTAAAATCGACTCCACTGGATAAACTTCCGAAAAAGCTGCTTGCCAAGAAATGA 1422 0.4712 MEGHIATTKAYNLFVKLLDGKTLTLKFPSSTLHANFVKDRIFEVTRIPTQHQRLVTGVQDLNRNESVISCSPEGGDVFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEEAERKLEKMAEEFLKKQAKKGKKGVGDGEAHKYVAKYREESERCAAEVAESVKEALMSIKGKRKVSNFKKDGADAKKMKIWMGKRKLNESDSDDSDEDGSEDEAENEKSTVLNNGNDSDSNKAEGSSGSVTGGKQDGESSVAGSSGSCSEEEKKTVLEGKMDSSNCLNIESLQNTTGKSVEPMTCDKMGNGVTNPVLESAALGIDAEEDGKKDSSEADELDPAVAQATNLISSQHVVDAIKSNAIETDALHEDKASSHEETHSSASAQEIDEPLNFEELNSAAELEVLGLERLKSELQERGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0288 473 Coils Coil 124 158 - -
Alju11g0288 473 MobiDBLite consensus disorder prediction 387 412 - -
Alju11g0288 473 Pfam Replication stress response SDE2 C-terminal 398 472 IPR025086 -
Alju11g0288 473 Coils Coil 419 439 - -
Alju11g0288 473 PANTHER SPLICING FACTOR SF3A-RELATED 12 472 - -
Alju11g0288 473 MobiDBLite consensus disorder prediction 248 289 - -
Alju11g0288 473 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 159 IPR024974 -
Alju11g0288 473 CDD Ubl_ubiquitin_like 13 84 - -
Alju11g0288 473 Gene3D - 4 92 - -
Alju11g0288 473 MobiDBLite consensus disorder prediction 223 301 - -
Alju11g0288 473 MobiDBLite consensus disorder prediction 387 405 - -
Alju11g0288 473 SUPERFAMILY Ubiquitin-like 11 91 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0288 Alju-ChrAlju11 2850682 2853309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0288 413 472 C2H2 Transcription Factor Family AT5G06160 48.333 3.63e-08 53.9