Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0284 ATGAATTCAAAGGGACATAAATTTGTGAGGTTTGATGATTGGAGTTCAGAGTCATCATCTACTACTGAGCAGAAAGATTCCAGTGATAATGGATATCATGGAAGAAAACTGAGACCAAGCGTAAGCGCTGTTTTAGAAAGTATCAAAAGAAGACTTGAGAATGGGTCTGATAAGATAAAAAACTTGCGAAAATCCTCAACTGTTCATCCTAGAAGTGATAGACCACCCAAGACATTGGCTCCTAGAAGAAAAATTCTTGATCCACAGGGGTCGTTCCTTCAGAAATGGAACAAAATATTTGTGATCACATCTATTATGGCTGTCTCTGTGGATCCACTGTTCTTTTACATCCCAGTGATCGGAGACAGAGGAAAATGCCTTGACTTGAATGAAAACTTGCAGATTATTGCTTCTGTTCTTCGGACATTCTTTGATCTTTTCTACGTTCTTCACATACTCTTTCAGTTTCGAACTGGGTTTATTGCTCCTTCTTCTAGAGTATTTGGAAGGGGCGAGCTGGTTAATGATCATCGGGCTATCATGAAAAGATATTTATCTTCATACTTTATTATTGATGTTCTATCAATTTTTCCACTTCCACAGGTGGTTGTTTTATTTATTATTCCTGAACTGAAGAACTCAGTTCCTTTTGTGGCAAAGGACTTGTTGACATATATGATCATGATCCAGTATGTGCCAAGAGTCTTGCGCATTTACCCATTATTCAAAGAAGTAACAAGAACTTCTGGCATACTCACAGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTGTATATGCTGGCAAGTCATTTGGTTGGAGCTTTTTGGTACCTGTTTTCAGTAGAATCAGAGGTTCGGTGCTGGCGCGGAGCATTGGAAAATACAGAATATAATAAAAATAAGTATCTGAGCTGTAACCAGAATGCAAATGTTACTTCACTTCTCAATAATTCATGTGCTCTTGTCGATCCTTCTCAAATTACCAACTCAACAACCTTCAATTTTGGAATATATGCCGATGCTCTACAAGCTGATGTGGTTAAGTCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGGCAGAACCTTAAGACAAGTACTTATGTCCCGGAGATAATCTTTGCTCTCTTCATTGCCGTCTTTGGATTAGTTCTGTTCTCGTTCCTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTTGAGGAGATGAGAATCAAAAGGAGAGATGCAGAGCAATGGATGGCCCACCGTATGCTTCCTGAGAACTTAAGGGAAAGAATTAGACGGTATGAACATTACAAATGGCAACAAAATCGGGGTGTTGAAGAAGAAGCATTAATTCGCAACCTTCCTAAAGATCTCAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTACTTAAAAAGGTGCCAATCTTTGAGAAAATGGATGAACAATTGTTGGATGCAATGGCTGATAGATTGAGGCCAATTCTTTATACAGAGAAGAGTTACATTGTCCGTGAAGGAGATCCGGTCGACGAAATGCTCTTCATCATTCGAGGAAAGCTGGCTACTATGACCACAAATGGAGGAAGAACTGGTTTCTTCAACTCCTCAGTTCTGCAAGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGACCCCAATTCCTCTTCAAATCTTCCTATTTCAACAACTACAGTGGAATCTATATCAGAAGTTGAAGCTTTTGCTCTCATGCCTGATGACTTGAAGTTTGTCACTTCCCAATTCCGAAGACTTCATAGCAAACAGCTTCAGCACACTTTCAGGTTTTATTCCTTGCAATGGAAGACATGGGGTGCCTGTTTCATACAAGCAGCTTGGCATCGTTACTGCAGAAAGAAGGAAGAGAGGCAATTGCGTGAAGCAGAAGAAAGACTAAAAGATACTTTGGCCAAAGAGAATGGATCTTCATCATCATCAACACCTAGTCTTAGTGCCTCCATTTATGCTTCAAGGTTTGCTGCCAATGCCTTACGAAACTTACAACAACACAGCGAACATAACAACAGATTGTCACCCAGATTGCTGCCTCTGCTGCCTCAGAAGCCATCTGAGCCTGATTTTACCTCTCAAAGTCACTAG 2172 0.4047 MNSKGHKFVRFDDWSSESSSTTEQKDSSDNGYHGRKLRPSVSAVLESIKRRLENGSDKIKNLRKSSTVHPRSDRPPKTLAPRRKILDPQGSFLQKWNKIFVITSIMAVSVDPLFFYIPVIGDRGKCLDLNENLQIIASVLRTFFDLFYVLHILFQFRTGFIAPSSRVFGRGELVNDHRAIMKRYLSSYFIIDVLSIFPLPQVVVLFIIPELKNSVPFVAKDLLTYMIMIQYVPRVLRIYPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHLVGAFWYLFSVESEVRCWRGALENTEYNKNKYLSCNQNANVTSLLNNSCALVDPSQITNSTTFNFGIYADALQADVVKSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVPEIIFALFIAVFGLVLFSFLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMAHRMLPENLRERIRRYEHYKWQQNRGVEEEALIRNLPKDLRRDIKRHLCLALLKKVPIFEKMDEQLLDAMADRLRPILYTEKSYIVREGDPVDEMLFIIRGKLATMTTNGGRTGFFNSSVLQAGDFCGEELLTWALDPNSSSNLPISTTTVESISEVEAFALMPDDLKFVTSQFRRLHSKQLQHTFRFYSLQWKTWGACFIQAAWHRYCRKKEERQLREAEERLKDTLAKENGSSSSSTPSLSASIYASRFAANALRNLQQHSEHNNRLSPRLLPLLPQKPSEPDFTSQSH 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0284 723 Pfam Ion transport protein 96 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju11g0284 723 Coils Coil 642 663 - -
Alju11g0284 723 FunFam Cyclic nucleotide-gated ion channel 1 417 481 - -
Alju11g0284 723 SUPERFAMILY Voltage-gated potassium channels 87 412 - -
Alju11g0284 723 Coils Coil 45 65 - -
Alju11g0284 723 MobiDBLite consensus disorder prediction 694 723 - -
Alju11g0284 723 Gene3D - 99 414 - -
Alju11g0284 723 MobiDBLite consensus disorder prediction 59 81 - -
Alju11g0284 723 CDD CAP_ED 490 621 IPR000595 -
Alju11g0284 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 718 - -
Alju11g0284 723 Pfam Cyclic nucleotide-binding domain 511 599 IPR000595 -
Alju11g0284 723 SMART cnmp_10 490 621 IPR000595 -
Alju11g0284 723 MobiDBLite consensus disorder prediction 1 38 - -
Alju11g0284 723 Gene3D Jelly Rolls 488 608 IPR014710 -
Alju11g0284 723 MobiDBLite consensus disorder prediction 59 82 - -
Alju11g0284 723 Gene3D Helix hairpin bin 417 481 - -
Alju11g0284 723 SUPERFAMILY cAMP-binding domain-like 419 613 IPR018490 -
Alju11g0284 723 ProSiteProfiles cAMP/cGMP binding motif profile. 490 574 IPR000595 -
Alju11g0284 723 FunFam Cyclic nucleotide-gated ion channel 1 488 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0284 Alju-ChrAlju11 2828539 2833186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0284 1 720 Ion Channels AT5G53130 64.472 0.0 947