Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0279 ATGCCCGCAAAACTCTTATCGCAACTCCATCTTATCCAAGTTTCTACCTTCTCTCGTTTCCCTTCCATGAAGCTCGGAGCCTCCATTCAAACGTCCCGGGCAGTCCCCATCTTCTCTCGCGTTTTCCCTTTCAGGCTCAAGTACCTAGGGTTGGAGTCTCATTCTGTACGGAATGAACTCTTCGGTGTACGGCGATTCTCGACTCGGTCGTTCCCTGGGAGGGCTGGGCCGAGGTCCGAGATCAACCGGGGGATTCGGGATACAGAAAGGGTCAGGGTTTCTAAGAGCTTGGTTGAGAATGAGGCTGAACTGAGTGACTGGATTGACGATTTGAAGACCGATTCTTATCGAGGCCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGATGGGTCGCAATGGAGGGAGGATTAGAGCATCTGGATCGATGATAGGGAGCAGGGAGAGTGGCTCGAACAGATTTGGTGAATCAACTCGGAGGAGAACCCGGGATTCATTTGAGTCGATTTCACGGAATTCTCGTATGAGCCGGAGATTTGAAGACAATGGCGATGAGGAGGGAAATGAAATCAGGTCTCCGAGAGGCGGTAGAGTGTCCGAAGGTCGGAATGTGAAGTCTCTCTTGGGGAAGAGAAGTGGTGGGGAGTTCCGAAGAGGGAGAAGGGATGGAAGGAGAAAATTGTATTCGATGAGTGAGGATGATGCTGATGAAGATGAACAAGGGGCAAAGAAGTTCATGGGCCGCTTTGGAGATCTTATTAGTGAAGAAGATAGTGACGATGAAGATACCGCGGATGAATATGGTGATCATGATTTACTGAAGAAGACGTTAGATTCTCAGCTGGGTCGAGAAAAGGAGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCTGAGAGATCTGACAATTATTTAAGTGGGACCAGATTTGATCAATGTTCAATCTCGCCTCTATCCTTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACTCTTCCAGTAATTCTCAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACCGGAAAAACTGTTGCCTTTTTGCTTCCATCTATTGAAGTTGTTGCAAAGTCACCTCCATTTGATCGTGATCTAAAGCGACCTTCAATCCTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCGTCCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCCTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAAGGACCATATTGAGAATACGGCAGGCTTTGCAACTCGGCTGAGGGGTGTGCAAGTCCTTGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATAATTGCTGCAGTTCCTAAACAAAGACAAACTCTTTTATTTTCTGCCACTGTTCCAGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAAAAGGGATCATGAATTTATCAATACTGTTGAAGAGGGTAGTGAGGAGACACATTCACAGGTTCAGCAGATGCATTTAGTTGCACCATTAGCCAAACATTTCTCCTTGCTCTACGTTCTTCTGAAGGAGCATATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTGACAAGACTTGTTGCTGACCTTCTTGGTGAGTTGAACTTGAACGTGAGAGAAATTCATTCAAGAAAGCCTCAGAACTATAGAACGAGGGTCTCTGAGGAGTTTCGGAAGTCAAAGGGCCTAATCCTTGTAACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTTACCCTGGTTGTACAGTTGGGTTTGCCAGCGGATAGAGAACAGTATATCCACCGACTGGGTCGAACAGGGCGGAAAGGTAAAGCAGGGCAAGGCATATTGTTGCTGGCTCCTTGGGAAGAATTCTTTTTATCTACCGTAAAGGGTTTGCCTATTACAAAAGCACCAGTACCTTCAGTTGATCCTGACACACAGAAAAAGGTGGAAAGGGCCCTATCCCATGTCGAAATGAAGCACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTATAATTCCAACAAGAAAGTGGGGAGAGACAAGCAAAGGCTAGTGGAGCTTGCTAATGAATTCAGTAGAACCATGGGGCTTGATAACCCTCCAGCTATTTCCAAGCTAGTCCTTGGCAAGATGGGCCTCAGAAATATACCTGGTTTACGTTCCAAATAG 2331 0.4672 MPAKLLSQLHLIQVSTFSRFPSMKLGASIQTSRAVPIFSRVFPFRLKYLGLESHSVRNELFGVRRFSTRSFPGRAGPRSEINRGIRDTERVRVSKSLVENEAELSDWIDDLKTDSYRGRLTSEEDDSDREMGRNGGRIRASGSMIGSRESGSNRFGESTRRRTRDSFESISRNSRMSRRFEDNGDEEGNEIRSPRGGRVSEGRNVKSLLGKRSGGEFRRGRRDGRRKLYSMSEDDADEDEQGAKKFMGRFGDLISEEDSDDEDTADEYGDHDLLKKTLDSQLGREKELKKSSPTRGSPERSDNYLSGTRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPFDRDLKRPSILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLRGVQVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPEEVRQVCHIALKRDHEFINTVEEGSEETHSQVQQMHLVAPLAKHFSLLYVLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQNYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQLGLPADREQYIHRLGRTGRKGKAGQGILLLAPWEEFFLSTVKGLPITKAPVPSVDPDTQKKVERALSHVEMKHKEAAYQAWLGYYNSNKKVGRDKQRLVELANEFSRTMGLDNPPAISKLVLGKMGLRNIPGLRSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0279 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Alju11g0279 776 MobiDBLite consensus disorder prediction 119 242 - -
Alju11g0279 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 522 IPR014001 -
Alju11g0279 776 SMART ultradead3 327 540 IPR014001 -
Alju11g0279 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 500 IPR027417 -
Alju11g0279 776 MobiDBLite consensus disorder prediction 212 242 - -
Alju11g0279 776 CDD SF2_C_DEAD 537 670 - -
Alju11g0279 776 Gene3D - 270 523 IPR027417 -
Alju11g0279 776 Pfam DEAD/DEAH box helicase 333 510 IPR011545 GO:0003676|GO:0005524
Alju11g0279 776 MobiDBLite consensus disorder prediction 268 296 - -
Alju11g0279 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 676 IPR027417 -
Alju11g0279 776 Gene3D - 531 757 IPR027417 -
Alju11g0279 776 SMART helicmild6 580 661 IPR001650 -
Alju11g0279 776 MobiDBLite consensus disorder prediction 255 308 - -
Alju11g0279 776 Pfam Helicase conserved C-terminal domain 556 661 IPR001650 -
Alju11g0279 776 CDD DEADc_MSS116 315 524 - -
Alju11g0279 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 703 IPR001650 -
Alju11g0279 776 PANTHER RNA HELICASE 283 705 - -
Alju11g0279 776 MobiDBLite consensus disorder prediction 154 199 - -
Alju11g0279 776 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0279 Alju-ChrAlju11 2789812 2795193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0279 299 689 Eukaryotic Initiation Factors Gene Family AT3G19760 27.764 2.86e-47 171